Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03880

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
1,080,457	+		ABI39_RS03875	0.60	+1.4
1,080,459	+		ABI39_RS03875	0.60	+0.6
1,080,460	-		ABI39_RS03875	0.60	+1.1
1,080,460	-		ABI39_RS03875	0.60	+0.6
1,080,460	-		ABI39_RS03875	0.60	-1.7
1,080,464	-		ABI39_RS03875	0.60	+0.6
1,080,464	-		ABI39_RS03875	0.60	+1.5
1,080,472	+		ABI39_RS03875	0.60	+0.6
1,080,536	-		ABI39_RS03875	0.63	-0.3
1,080,592	+		ABI39_RS03875	0.66	-0.4
1,080,685	-		ABI39_RS03875	0.70	+1.9
1,080,686	+		ABI39_RS03875	0.70	+1.0
1,080,687	-		ABI39_RS03875	0.70	-0.2
1,080,687	-		ABI39_RS03875	0.70	-1.2
1,080,775	+		ABI39_RS03875	0.73	-1.2
1,080,859	+		ABI39_RS03875	0.77	+0.1
1,081,140	-		ABI39_RS03875	0.89	+0.9
1,081,238	+				+0.5
1,081,239	-				+1.1
1,081,267	+				-0.1
1,081,267	+				+1.0
1,081,305	-				-0.4
1,081,336	+				+0.7
1,081,411	+				-0.7
1,081,477	+				+0.8
1,081,477	+				-0.2
1,081,565	-				-1.7
1,081,592	+				-1.6
1,081,691	+		ABI39_RS03880	0.14	-1.7
1,081,692	-		ABI39_RS03880	0.14	-2.2
1,081,693	+		ABI39_RS03880	0.14	-1.0
1,081,796	-		ABI39_RS03880	0.20	-2.5
1,081,810	-		ABI39_RS03880	0.21	-1.8
1,081,992	+		ABI39_RS03880	0.32	-1.8
1,082,050	+		ABI39_RS03880	0.35	-1.5
1,082,085	-		ABI39_RS03880	0.38	-2.5
1,082,100	-		ABI39_RS03880	0.38	-3.3
1,082,104	-		ABI39_RS03880	0.39	-2.1
1,082,120	+		ABI39_RS03880	0.40	-1.5
1,082,121	-		ABI39_RS03880	0.40	-2.2
1,082,157	-		ABI39_RS03880	0.42	-2.6
1,082,430	-		ABI39_RS03880	0.58	-0.7
1,082,435	+		ABI39_RS03880	0.58	-1.2
1,082,436	-		ABI39_RS03880	0.58	-1.2
1,082,458	-		ABI39_RS03880	0.60	-3.4
1,082,538	+		ABI39_RS03880	0.64	-1.2
1,082,549	-		ABI39_RS03880	0.65	-1.3
1,082,605	+		ABI39_RS03880	0.68	-2.5
1,082,605	+		ABI39_RS03880	0.68	-1.2
1,082,606	-		ABI39_RS03880	0.68	-1.7
1,082,683	+		ABI39_RS03880	0.73	-2.6
1,082,684	-		ABI39_RS03880	0.73	-1.4
1,082,684	-		ABI39_RS03880	0.73	-3.4
1,082,724	-		ABI39_RS03880	0.75	-3.0
1,082,724	-		ABI39_RS03880	0.75	-1.8
1,082,750	+		ABI39_RS03880	0.77	-3.4
1,082,828	+		ABI39_RS03880	0.81	-2.6
1,082,829	-		ABI39_RS03880	0.81	-1.3
1,082,839	-		ABI39_RS03880	0.82	-1.5
1,082,888	+		ABI39_RS03880	0.85	-2.4
1,082,888	+		ABI39_RS03880	0.85	-1.8
1,082,908	+		ABI39_RS03880	0.86	-0.8
1,082,996	+				-2.8
1,083,069	-				-1.8
1,083,071	+				+0.8
1,083,149	+				-1.8
1,083,184	+				-0.2
1,083,281	-				+0.8
1,083,293	-		ABI39_RS03885	0.11	-0.2
1,083,318	-		ABI39_RS03885	0.13	-1.8
1,083,336	-		ABI39_RS03885	0.15	-0.2
1,083,460	+		ABI39_RS03885	0.28	-0.2
1,083,466	+		ABI39_RS03885	0.28	-1.2
1,083,481	-		ABI39_RS03885	0.30	-0.2
1,083,616	-		ABI39_RS03885	0.43	-1.8
1,083,713	-		ABI39_RS03885	0.53	+1.8
1,083,714	+		ABI39_RS03885	0.53	-0.2
1,083,717	-		ABI39_RS03885	0.54	+3.1
1,083,717	-		ABI39_RS03885	0.54	+0.6
1,083,719	-		ABI39_RS03885	0.54	+0.3
1,083,723	-		ABI39_RS03885	0.54	-0.2
1,084,063	+		ABI39_RS03885	0.89	+2.6
1,084,074	+		ABI39_RS03885	0.90	-0.8
1,084,075	-				+0.3
1,084,105	+				-1.6