Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01495 and ABI39_RS01500 are separated by 104 nucleotides ABI39_RS01500 and ABI39_RS01505 are separated by 195 nucleotides
ABI39_RS01495: ABI39_RS01495 - IS4-like element ISBf8 family transposase, at 449,889 to 451,334
_RS01495
ABI39_RS01500: ABI39_RS01500 - carboxypeptidase-like regulatory domain-containing protein, at 451,439 to 452,896
_RS01500
ABI39_RS01505: ABI39_RS01505 - IS4-like element ISBf8 family transposase, at 453,092 to 454,537
_RS01505
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 451.478 kb on - strand at 451.602 kb on + strand, within ABI39_RS01500 at 451.602 kb on + strand, within ABI39_RS01500 at 451.603 kb on - strand, within ABI39_RS01500 at 451.703 kb on + strand, within ABI39_RS01500 at 451.755 kb on - strand, within ABI39_RS01500 at 451.774 kb on - strand, within ABI39_RS01500 at 451.801 kb on + strand, within ABI39_RS01500 at 451.821 kb on + strand, within ABI39_RS01500 at 451.922 kb on - strand, within ABI39_RS01500 at 451.930 kb on + strand, within ABI39_RS01500 at 451.938 kb on + strand, within ABI39_RS01500 at 451.958 kb on - strand, within ABI39_RS01500 at 451.962 kb on + strand, within ABI39_RS01500 at 451.996 kb on + strand, within ABI39_RS01500 at 451.996 kb on + strand, within ABI39_RS01500 at 451.998 kb on + strand, within ABI39_RS01500 at 451.999 kb on - strand, within ABI39_RS01500 at 451.999 kb on - strand, within ABI39_RS01500 at 451.999 kb on - strand, within ABI39_RS01500 at 452.097 kb on - strand, within ABI39_RS01500 at 452.126 kb on - strand, within ABI39_RS01500 at 452.149 kb on + strand, within ABI39_RS01500 at 452.214 kb on + strand, within ABI39_RS01500 at 452.338 kb on + strand, within ABI39_RS01500 at 452.405 kb on - strand, within ABI39_RS01500 at 452.505 kb on - strand, within ABI39_RS01500 at 452.576 kb on + strand, within ABI39_RS01500 at 452.577 kb on - strand, within ABI39_RS01500 at 452.621 kb on + strand, within ABI39_RS01500 at 452.621 kb on + strand, within ABI39_RS01500 at 452.644 kb on + strand, within ABI39_RS01500 at 452.645 kb on - strand, within ABI39_RS01500 at 452.647 kb on - strand, within ABI39_RS01500 at 452.647 kb on - strand, within ABI39_RS01500 at 452.690 kb on - strand, within ABI39_RS01500 at 452.744 kb on + strand, within ABI39_RS01500 at 452.774 kb on + strand at 452.774 kb on + strand at 452.804 kb on - strand at 452.804 kb on - strand at 452.828 kb on + strand at 452.842 kb on - strand at 452.843 kb on + strand at 452.845 kb on + strand at 452.846 kb on - strand at 452.846 kb on - strand at 452.852 kb on - strand at 452.855 kb on - strand at 452.855 kb on - strand at 452.878 kb on + strand at 452.879 kb on - strand at 452.899 kb on + strand at 452.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 451,478 - +0.7 451,602 + ABI39_RS01500 0.11 +2.2 451,602 + ABI39_RS01500 0.11 +0.6 451,603 - ABI39_RS01500 0.11 +1.6 451,703 + ABI39_RS01500 0.18 -0.6 451,755 - ABI39_RS01500 0.22 +0.6 451,774 - ABI39_RS01500 0.23 -1.0 451,801 + ABI39_RS01500 0.25 -0.6 451,821 + ABI39_RS01500 0.26 -2.9 451,922 - ABI39_RS01500 0.33 +1.1 451,930 + ABI39_RS01500 0.34 -1.4 451,938 + ABI39_RS01500 0.34 -0.3 451,958 - ABI39_RS01500 0.36 -0.6 451,962 + ABI39_RS01500 0.36 +0.1 451,996 + ABI39_RS01500 0.38 -0.4 451,996 + ABI39_RS01500 0.38 +1.9 451,998 + ABI39_RS01500 0.38 +0.3 451,999 - ABI39_RS01500 0.38 -1.4 451,999 - ABI39_RS01500 0.38 -0.2 451,999 - ABI39_RS01500 0.38 -0.2 452,097 - ABI39_RS01500 0.45 +0.1 452,126 - ABI39_RS01500 0.47 +0.6 452,149 + ABI39_RS01500 0.49 -1.6 452,214 + ABI39_RS01500 0.53 -0.6 452,338 + ABI39_RS01500 0.62 +0.2 452,405 - ABI39_RS01500 0.66 -0.3 452,505 - ABI39_RS01500 0.73 -0.3 452,576 + ABI39_RS01500 0.78 -2.1 452,577 - ABI39_RS01500 0.78 -0.9 452,621 + ABI39_RS01500 0.81 +0.2 452,621 + ABI39_RS01500 0.81 -0.2 452,644 + ABI39_RS01500 0.83 -2.0 452,645 - ABI39_RS01500 0.83 -1.1 452,647 - ABI39_RS01500 0.83 -0.0 452,647 - ABI39_RS01500 0.83 +0.3 452,690 - ABI39_RS01500 0.86 +0.2 452,744 + ABI39_RS01500 0.90 -0.9 452,774 + -1.4 452,774 + +1.3 452,804 - +0.9 452,804 - +1.3 452,828 + +0.2 452,842 - -1.0 452,843 + +0.3 452,845 + -0.2 452,846 - +1.2 452,846 - -0.9 452,852 - +0.4 452,855 - +0.9 452,855 - -0.1 452,878 + -2.2 452,879 - -0.6 452,899 + -1.2 452,982 - +0.8
Or see this region's nucleotide sequence