Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS21240

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
5,230,236	-		ABI39_RS21235	0.57	-0.4
5,230,254	-		ABI39_RS21235	0.58	-0.4
5,230,260	-		ABI39_RS21235	0.59	-0.4
5,230,262	+		ABI39_RS21235	0.59	+0.9
5,230,263	-		ABI39_RS21235	0.59	-1.8
5,230,267	-		ABI39_RS21235	0.59	-0.8
5,230,385	-		ABI39_RS21235	0.68	-0.3
5,230,780	+				-0.5
5,230,781	-				-1.1
5,230,811	+				-0.8
5,230,826	-				+0.3
5,230,926	-				-0.8
5,231,071	-				+0.1
5,231,552	+		ABI39_RS21240	0.65	-2.7
5,231,708	+		ABI39_RS21240	0.87	-0.1
5,231,708	+		ABI39_RS21240	0.87	+0.6
5,231,709	-		ABI39_RS21240	0.87	-1.6
5,231,709	-		ABI39_RS21240	0.87	+1.1
5,231,720	+		ABI39_RS21240	0.89	-2.4
5,231,785	-				+0.2
5,231,785	-				+0.5
5,231,789	+				+0.4
5,231,866	-		ABI39_RS22940	0.86	+1.1
5,231,866	-		ABI39_RS22940	0.86	+1.3
5,231,898	+				+1.3
5,231,898	+				-0.1
5,231,920	+				-0.2
5,231,924	-				-1.3
5,232,022	+				+0.5
5,232,099	-				+0.1
5,232,251	-				-1.7
5,232,259	+				+0.9
5,232,260	-				+0.5
5,232,420	-		ABI39_RS21245	0.28	-1.4
5,232,427	+		ABI39_RS21245	0.29	-1.4
5,232,493	+		ABI39_RS21245	0.38	+1.1
5,232,595	+		ABI39_RS21245	0.53	-0.6
5,232,596	-		ABI39_RS21245	0.54	-0.0
5,232,721	-		ABI39_RS21245	0.72	+0.9
5,232,774	-		ABI39_RS21245	0.80	+0.5