Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20610 and ABI39_RS20615 are separated by 120 nucleotides ABI39_RS20615 and ABI39_RS20620 are separated by 126 nucleotides
ABI39_RS20610: ABI39_RS20610 - SDR family oxidoreductase, at 5,081,194 to 5,082,132
_RS20610
ABI39_RS20615: ABI39_RS20615 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,082,253 to 5,083,077
_RS20615
ABI39_RS20620: ABI39_RS20620 - ACP S-malonyltransferase, at 5,083,204 to 5,084,091
_RS20620
Position (kb) 5082
5083
5084 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5081.293 kb on - strand, within ABI39_RS20610 at 5081.329 kb on + strand, within ABI39_RS20610 at 5081.461 kb on - strand, within ABI39_RS20610 at 5081.488 kb on + strand, within ABI39_RS20610 at 5081.488 kb on + strand, within ABI39_RS20610 at 5081.489 kb on - strand, within ABI39_RS20610 at 5081.533 kb on + strand, within ABI39_RS20610 at 5081.541 kb on + strand, within ABI39_RS20610 at 5081.541 kb on + strand, within ABI39_RS20610 at 5081.557 kb on + strand, within ABI39_RS20610 at 5081.576 kb on - strand, within ABI39_RS20610 at 5081.610 kb on - strand, within ABI39_RS20610 at 5081.703 kb on - strand, within ABI39_RS20610 at 5081.817 kb on + strand, within ABI39_RS20610 at 5081.896 kb on + strand, within ABI39_RS20610 at 5081.896 kb on + strand, within ABI39_RS20610 at 5081.924 kb on + strand, within ABI39_RS20610 at 5081.959 kb on + strand, within ABI39_RS20610 at 5081.959 kb on + strand, within ABI39_RS20610 at 5081.962 kb on - strand, within ABI39_RS20610 at 5082.055 kb on - strand at 5082.083 kb on - strand at 5082.096 kb on + strand at 5082.218 kb on + strand at 5082.218 kb on + strand at 5082.250 kb on + strand at 5082.272 kb on + strand at 5082.428 kb on + strand, within ABI39_RS20615 at 5082.431 kb on - strand, within ABI39_RS20615 at 5082.431 kb on - strand, within ABI39_RS20615 at 5082.431 kb on - strand, within ABI39_RS20615 at 5082.483 kb on + strand, within ABI39_RS20615 at 5082.488 kb on + strand, within ABI39_RS20615 at 5082.540 kb on + strand, within ABI39_RS20615 at 5082.545 kb on - strand, within ABI39_RS20615 at 5082.663 kb on + strand, within ABI39_RS20615 at 5082.663 kb on + strand, within ABI39_RS20615 at 5082.663 kb on + strand, within ABI39_RS20615 at 5082.712 kb on + strand, within ABI39_RS20615 at 5082.713 kb on - strand, within ABI39_RS20615 at 5082.818 kb on + strand, within ABI39_RS20615 at 5082.818 kb on + strand, within ABI39_RS20615 at 5083.011 kb on + strand at 5083.095 kb on + strand at 5083.119 kb on + strand at 5083.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 5,081,293 - ABI39_RS20610 0.11 +0.0 5,081,329 + ABI39_RS20610 0.14 -2.1 5,081,461 - ABI39_RS20610 0.28 -1.3 5,081,488 + ABI39_RS20610 0.31 +1.0 5,081,488 + ABI39_RS20610 0.31 -0.5 5,081,489 - ABI39_RS20610 0.31 -0.0 5,081,533 + ABI39_RS20610 0.36 -1.0 5,081,541 + ABI39_RS20610 0.37 +0.1 5,081,541 + ABI39_RS20610 0.37 -0.3 5,081,557 + ABI39_RS20610 0.39 -0.9 5,081,576 - ABI39_RS20610 0.41 -2.1 5,081,610 - ABI39_RS20610 0.44 -0.6 5,081,703 - ABI39_RS20610 0.54 +2.3 5,081,817 + ABI39_RS20610 0.66 -0.4 5,081,896 + ABI39_RS20610 0.75 -0.8 5,081,896 + ABI39_RS20610 0.75 +1.6 5,081,924 + ABI39_RS20610 0.78 +0.6 5,081,959 + ABI39_RS20610 0.81 +1.2 5,081,959 + ABI39_RS20610 0.81 -0.5 5,081,962 - ABI39_RS20610 0.82 -0.1 5,082,055 - -0.6 5,082,083 - -0.1 5,082,096 + -0.5 5,082,218 + +1.0 5,082,218 + +1.2 5,082,250 + +0.8 5,082,272 + -1.7 5,082,428 + ABI39_RS20615 0.21 -2.7 5,082,431 - ABI39_RS20615 0.22 -1.4 5,082,431 - ABI39_RS20615 0.22 -2.4 5,082,431 - ABI39_RS20615 0.22 -2.1 5,082,483 + ABI39_RS20615 0.28 -2.9 5,082,488 + ABI39_RS20615 0.28 -2.6 5,082,540 + ABI39_RS20615 0.35 -1.4 5,082,545 - ABI39_RS20615 0.35 -2.4 5,082,663 + ABI39_RS20615 0.50 -0.9 5,082,663 + ABI39_RS20615 0.50 -1.6 5,082,663 + ABI39_RS20615 0.50 -3.9 5,082,712 + ABI39_RS20615 0.56 -1.3 5,082,713 - ABI39_RS20615 0.56 -1.5 5,082,818 + ABI39_RS20615 0.68 -2.4 5,082,818 + ABI39_RS20615 0.68 -4.6 5,083,011 + -0.1 5,083,095 + -0.0 5,083,119 + -1.6 5,083,139 - -1.6
Or see this region's nucleotide sequence