Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17780

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
4,486,214	+		ABI39_RS17775	0.15	-1.9
4,486,263	+		ABI39_RS17775	0.20	-1.7
4,486,276	-		ABI39_RS17775	0.21	-0.5
4,486,276	-		ABI39_RS17775	0.21	-2.2
4,486,277	+		ABI39_RS17775	0.21	-3.5
4,486,341	+		ABI39_RS17775	0.26	-2.2
4,486,375	+		ABI39_RS17775	0.29	-1.6
4,486,456	+		ABI39_RS17775	0.37	-2.2
4,486,608	+		ABI39_RS17775	0.50	-3.0
4,486,611	+		ABI39_RS17775	0.50	-0.6
4,486,611	+		ABI39_RS17775	0.50	-1.2
4,486,611	+		ABI39_RS17775	0.50	-2.7
4,486,614	-		ABI39_RS17775	0.51	-1.1
4,486,615	+		ABI39_RS17775	0.51	-2.1
4,486,616	-		ABI39_RS17775	0.51	-0.7
4,486,798	+		ABI39_RS17775	0.67	-1.7
4,487,027	-		ABI39_RS17775	0.87	-0.9
4,487,029	-		ABI39_RS17775	0.87	-1.9
4,487,029	-		ABI39_RS17775	0.87	-1.7
4,487,073	+				-2.4
4,487,174	+				+0.4
4,487,174	+				+0.2
4,487,174	+				-0.4
4,487,175	-				-1.5
4,487,214	+				-1.1
4,487,329	+		ABI39_RS17780	0.16	-2.1
4,487,330	-		ABI39_RS17780	0.16	-3.5
4,487,417	-		ABI39_RS17780	0.28	-1.0
4,487,421	+		ABI39_RS17780	0.29	-1.9
4,487,422	-		ABI39_RS17780	0.29	-0.9
4,487,453	+		ABI39_RS17780	0.33	-2.3
4,487,599	+		ABI39_RS17780	0.53	-3.8
4,487,669	+		ABI39_RS17780	0.63	-1.9
4,487,670	-		ABI39_RS17780	0.63	-0.9
4,487,673	+		ABI39_RS17780	0.63	-2.1
4,487,674	-		ABI39_RS17780	0.63	-0.7
4,487,706	+		ABI39_RS17780	0.68	-0.7
4,487,824	-		ABI39_RS17780	0.84	-2.5
4,487,987	-				-1.4
4,488,067	-				-0.1
4,488,067	-				+1.2
4,488,067	-				-1.5
4,488,182	+		ABI39_RS17785	0.11	+0.2
4,488,212	-		ABI39_RS17785	0.14	-0.2
4,488,212	-		ABI39_RS17785	0.14	-1.5
4,488,215	+		ABI39_RS17785	0.14	-1.7
4,488,216	-		ABI39_RS17785	0.14	-3.4
4,488,216	-		ABI39_RS17785	0.14	+0.1
4,488,252	+		ABI39_RS17785	0.18	+0.5
4,488,253	-		ABI39_RS17785	0.18	+0.7
4,488,253	-		ABI39_RS17785	0.18	+1.8
4,488,374	+		ABI39_RS17785	0.28	+1.0
4,488,399	-		ABI39_RS17785	0.31	+0.8
4,488,520	-		ABI39_RS17785	0.41	+0.0
4,488,588	+		ABI39_RS17785	0.47	+1.3
4,488,588	+		ABI39_RS17785	0.47	-0.8
4,488,589	-		ABI39_RS17785	0.47	+0.5
4,488,847	+		ABI39_RS17785	0.70	+1.0
4,488,874	+		ABI39_RS17785	0.73	-0.3
4,488,876	+		ABI39_RS17785	0.73	+1.1
4,488,902	-		ABI39_RS17785	0.75	-0.6