Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17740 and ABI39_RS17745 are separated by 387 nucleotides ABI39_RS17745 and ABI39_RS17750 overlap by 11 nucleotides ABI39_RS17750 and ABI39_RS17755 are separated by 17 nucleotides ABI39_RS17755 and ABI39_RS17760 are separated by 11 nucleotides
ABI39_RS17740: ABI39_RS17740 - superoxide dismutase, at 4,480,556 to 4,481,137
_RS17740
ABI39_RS17745: ABI39_RS17745 - sulfur carrier protein ThiS, at 4,481,525 to 4,481,725
_RS17745
ABI39_RS17750: ABI39_RS17750 - thiamine phosphate synthase, at 4,481,715 to 4,482,341
_RS17750
ABI39_RS17755: ABI39_RS17755 - thiazole synthase, at 4,482,359 to 4,483,132
_RS17755
ABI39_RS17760: ABI39_RS17760 - phosphomethylpyrimidine synthase ThiC, at 4,483,144 to 4,484,841
_RS17760
Position (kb) 4481
4482
4483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4480.771 kb on - strand, within ABI39_RS17740 at 4480.780 kb on + strand, within ABI39_RS17740 at 4480.787 kb on + strand, within ABI39_RS17740 at 4480.787 kb on + strand, within ABI39_RS17740 at 4480.840 kb on - strand, within ABI39_RS17740 at 4481.035 kb on - strand, within ABI39_RS17740 at 4481.048 kb on + strand, within ABI39_RS17740 at 4481.049 kb on - strand, within ABI39_RS17740 at 4481.051 kb on + strand, within ABI39_RS17740 at 4481.160 kb on + strand at 4481.403 kb on + strand at 4481.519 kb on + strand at 4481.520 kb on - strand at 4481.656 kb on - strand, within ABI39_RS17745 at 4481.677 kb on - strand, within ABI39_RS17745 at 4481.766 kb on + strand at 4481.766 kb on + strand at 4481.775 kb on + strand at 4481.885 kb on - strand, within ABI39_RS17750 at 4482.056 kb on - strand, within ABI39_RS17750 at 4482.224 kb on + strand, within ABI39_RS17750 at 4482.375 kb on + strand at 4482.376 kb on - strand at 4482.419 kb on - strand at 4482.553 kb on - strand, within ABI39_RS17755 at 4482.766 kb on + strand, within ABI39_RS17755 at 4482.767 kb on - strand, within ABI39_RS17755 at 4483.140 kb on + strand at 4483.140 kb on + strand at 4483.172 kb on - strand at 4483.193 kb on - strand at 4483.194 kb on + strand at 4483.194 kb on + strand at 4483.195 kb on - strand at 4483.226 kb on + strand at 4483.254 kb on + strand at 4483.255 kb on - strand at 4483.264 kb on - strand at 4483.286 kb on + strand at 4483.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 4,480,771 - ABI39_RS17740 0.37 -2.1 4,480,780 + ABI39_RS17740 0.38 +0.4 4,480,787 + ABI39_RS17740 0.40 +0.4 4,480,787 + ABI39_RS17740 0.40 +1.2 4,480,840 - ABI39_RS17740 0.49 -0.1 4,481,035 - ABI39_RS17740 0.82 -1.2 4,481,048 + ABI39_RS17740 0.85 +0.9 4,481,049 - ABI39_RS17740 0.85 +1.5 4,481,051 + ABI39_RS17740 0.85 +0.9 4,481,160 + +0.3 4,481,403 + +1.2 4,481,519 + -1.8 4,481,520 - -1.1 4,481,656 - ABI39_RS17745 0.65 -1.7 4,481,677 - ABI39_RS17745 0.76 -3.0 4,481,766 + -2.8 4,481,766 + -2.2 4,481,775 + -2.9 4,481,885 - ABI39_RS17750 0.27 -3.3 4,482,056 - ABI39_RS17750 0.54 -2.5 4,482,224 + ABI39_RS17750 0.81 -1.7 4,482,375 + -1.0 4,482,376 - -1.9 4,482,419 - -2.5 4,482,553 - ABI39_RS17755 0.25 -1.8 4,482,766 + ABI39_RS17755 0.53 -2.3 4,482,767 - ABI39_RS17755 0.53 -2.6 4,483,140 + -2.4 4,483,140 + +0.6 4,483,172 - -3.8 4,483,193 - -1.1 4,483,194 + -1.5 4,483,194 + +0.0 4,483,195 - -3.9 4,483,226 + +0.1 4,483,254 + +0.2 4,483,255 - -3.7 4,483,264 - -2.9 4,483,286 + -1.0 4,483,309 - -3.3
Or see this region's nucleotide sequence