Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12645

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
3,315,549	+		ABI39_RS12640	0.29	+0.4
3,315,549	+		ABI39_RS12640	0.29	+0.0
3,315,566	+		ABI39_RS12640	0.30	+0.4
3,315,589	+		ABI39_RS12640	0.32	+0.1
3,315,634	+		ABI39_RS12640	0.35	+0.5
3,315,784	+		ABI39_RS12640	0.46	-2.1
3,315,841	+		ABI39_RS12640	0.51	+1.0
3,315,847	+		ABI39_RS12640	0.51	+0.9
3,315,848	-		ABI39_RS12640	0.51	-1.4
3,315,848	-		ABI39_RS12640	0.51	-0.5
3,315,937	+		ABI39_RS12640	0.58	-0.2
3,315,989	+		ABI39_RS12640	0.62	-2.2
3,315,990	-		ABI39_RS12640	0.62	-0.2
3,316,012	+		ABI39_RS12640	0.63	+0.7
3,316,139	-		ABI39_RS12640	0.73	-0.9
3,316,307	+		ABI39_RS12640	0.85	-2.0
3,316,408	+				+1.6
3,316,409	-				+1.2
3,316,661	+		ABI39_RS12645	0.13	-5.2
3,316,665	+		ABI39_RS12645	0.13	-5.9
3,316,665	+		ABI39_RS12645	0.13	-3.8
3,316,670	+		ABI39_RS12645	0.14	-4.3
3,316,671	-		ABI39_RS12645	0.14	-5.4
3,316,753	-		ABI39_RS12645	0.22	-4.8
3,316,793	+		ABI39_RS12645	0.25	-2.4
3,316,797	-		ABI39_RS12645	0.26	-3.5
3,316,797	-		ABI39_RS12645	0.26	-4.3
3,316,831	-		ABI39_RS12645	0.29	-3.9
3,316,884	-		ABI39_RS12645	0.34	-4.7
3,316,888	-		ABI39_RS12645	0.34	-3.2
3,316,888	-		ABI39_RS12645	0.34	-6.1
3,316,914	+		ABI39_RS12645	0.36	-3.9
3,316,975	-		ABI39_RS12645	0.42	-3.4
3,316,983	+		ABI39_RS12645	0.43	-5.0
3,316,984	-		ABI39_RS12645	0.43	-5.6
3,317,016	-		ABI39_RS12645	0.46	-5.5
3,317,090	-		ABI39_RS12645	0.53	-4.2
3,317,124	+		ABI39_RS12645	0.56	-5.2
3,317,196	+		ABI39_RS12645	0.63	-5.4
3,317,270	-		ABI39_RS12645	0.70	-5.0
3,317,390	+		ABI39_RS12645	0.81	-0.0
3,317,391	-		ABI39_RS12645	0.81	-2.8
3,317,435	+		ABI39_RS12645	0.85	-3.6
3,317,439	+		ABI39_RS12645	0.85	-4.8
3,317,439	+		ABI39_RS12645	0.85	-3.4
3,317,499	-				-4.2
3,317,576	+				-4.0
3,317,652	+				-4.8
3,317,652	+				-4.1
3,317,653	-				+0.5
3,317,750	-				+1.1
3,317,920	+		ABI39_RS12650	0.20	+2.8
3,317,921	-		ABI39_RS12650	0.20	-1.0
3,317,921	-		ABI39_RS12650	0.20	+2.4
3,317,923	-		ABI39_RS12650	0.20	-1.0
3,317,957	+		ABI39_RS12650	0.26	-2.0
3,318,033	+		ABI39_RS12650	0.39	-0.6
3,318,070	+		ABI39_RS12650	0.46	+2.0
3,318,314	+		ABI39_RS12650	0.88	-1.6
3,318,316	+		ABI39_RS12650	0.88	+0.8
3,318,348	-				+0.9
3,318,360	-				+0.5
3,318,360	-				-1.6
3,318,362	+				+1.3
3,318,392	-				-0.2
3,318,392	-				-2.6
3,318,393	+				-1.4
3,318,394	-				+1.3
3,318,412	-				-0.1