Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10640

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,835,732	+		ABI39_RS10630	0.88	+0.5
2,835,820	+				+0.7
2,835,823	-				-0.5
2,835,823	-				-0.2
2,835,938	+				+0.4
2,835,939	-				-2.0
2,835,939	-				+0.0
2,835,999	+				+0.2
2,836,134	+				-4.6
2,836,134	+				+1.4
2,836,149	+				+0.2
2,836,149	+				-0.5
2,836,151	+				+0.4
2,836,151	+				+0.9
2,836,173	+				+0.7
2,836,174	-				-1.6
2,836,183	-				+1.2
2,836,201	+				-0.2
2,836,202	-				+0.6
2,836,245	+				+1.3
2,836,246	-				-0.6
2,836,295	-				-1.5
2,836,303	+				+1.4
2,836,312	+				+0.4
2,836,335	-				-0.9
2,836,369	+		ABI39_RS10635	0.11	-1.4
2,836,518	+		ABI39_RS10635	0.65	+0.6
2,836,519	-		ABI39_RS10635	0.65	-0.4
2,836,595	+				+0.7
2,836,682	-				-1.0
2,836,683	+				-1.1
2,836,683	+				-1.4
2,836,684	-				+0.7
2,836,685	+				+0.3
2,836,685	+				+1.5
2,836,685	+				+0.9
2,836,686	-				-0.0
2,836,687	+				+0.3
2,836,832	+		ABI39_RS10640	0.11	-3.6
2,836,947	-		ABI39_RS10640	0.20	-3.4
2,836,993	+		ABI39_RS10640	0.23	-3.1
2,837,009	+		ABI39_RS10640	0.24	-1.7
2,837,028	+		ABI39_RS10640	0.26	-3.7
2,837,135	+		ABI39_RS10640	0.34	-3.3
2,837,136	-		ABI39_RS10640	0.34	-5.0
2,837,252	+		ABI39_RS10640	0.43	-3.5
2,837,254	+		ABI39_RS10640	0.43	-3.5
2,837,271	-		ABI39_RS10640	0.45	-3.6
2,837,277	-		ABI39_RS10640	0.45	-2.5
2,837,280	-		ABI39_RS10640	0.45	-4.5
2,837,341	+		ABI39_RS10640	0.50	-4.2
2,837,400	-		ABI39_RS10640	0.55	-3.4
2,837,536	+		ABI39_RS10640	0.65	-2.2
2,837,537	-		ABI39_RS10640	0.65	-3.4
2,837,537	-		ABI39_RS10640	0.65	-4.2
2,837,537	-		ABI39_RS10640	0.65	-2.9
2,837,625	+		ABI39_RS10640	0.72	-4.5
2,837,625	+		ABI39_RS10640	0.72	-1.7
2,837,652	-		ABI39_RS10640	0.74	-3.9
2,837,743	-		ABI39_RS10640	0.81	-4.8
2,837,865	+				-2.0
2,837,865	+				-3.5
2,837,886	+				-1.7
2,837,949	-				-4.0
2,837,988	-				-4.4
2,837,988	-				-3.7
2,837,994	+				-4.1
2,837,998	+				-4.6
2,837,999	-				-3.2
2,837,999	-				-3.7
2,838,133	-				+1.5
2,838,139	-				+0.2