Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09610

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,587,841	-		ABI39_RS09600	0.87	+0.7
2,587,911	-		ABI39_RS09600	0.90	+0.8
2,587,935	-				-0.9
2,587,950	-				+1.9
2,587,951	+				+1.5
2,587,956	+				-0.2
2,588,052	-				+0.7
2,588,056	+				+0.9
2,588,176	+				+1.0
2,588,193	+				+0.8
2,588,405	+				+0.9
2,588,407	+				+0.6
2,588,409	+				+0.5
2,588,428	+				+0.0
2,588,429	-				+1.0
2,588,505	+				+1.2
2,588,519	+				-1.1
2,588,520	-				+1.1
2,588,542	+				+1.6
2,588,548	+				+0.6
2,588,707	-				+0.4
2,588,708	+				+0.9
2,588,715	-				-0.0
2,588,715	-				+0.4
2,588,728	-				+0.0
2,589,197	-		ABI39_RS09610	0.32	+0.6
2,589,197	-		ABI39_RS09610	0.32	+1.4
2,589,197	-		ABI39_RS09610	0.32	-1.4
2,589,267	-		ABI39_RS09610	0.38	+0.8
2,589,322	+		ABI39_RS09610	0.42	+0.2
2,589,323	-		ABI39_RS09610	0.42	+0.6
2,589,354	+		ABI39_RS09610	0.45	+1.4
2,589,604	+		ABI39_RS09610	0.65	-1.5
2,589,666	+		ABI39_RS09610	0.70	+1.3
2,589,730	+		ABI39_RS09610	0.75	+0.6
2,589,794	+		ABI39_RS09610	0.80	-2.7
2,589,823	+		ABI39_RS09610	0.82	+0.9
2,589,884	+		ABI39_RS09610	0.87	+0.1
2,589,916	-		ABI39_RS09610	0.90	+1.0
2,590,160	+		ABI39_RS09615	0.15	+1.4
2,590,163	+		ABI39_RS09615	0.15	-0.3
2,590,174	+		ABI39_RS09615	0.17	-3.1
2,590,242	+		ABI39_RS09615	0.26	-0.5
2,590,312	-		ABI39_RS09615	0.35	-0.1
2,590,374	-		ABI39_RS09615	0.43	+0.2
2,590,477	-		ABI39_RS09615	0.56	+0.6
2,590,619	+		ABI39_RS09615	0.75	+0.9
2,590,619	+		ABI39_RS09615	0.75	+0.7
2,590,626	+		ABI39_RS09615	0.76	-0.5
2,590,638	-		ABI39_RS09615	0.77	+1.1
2,590,658	+		ABI39_RS09615	0.80	+1.0
2,590,659	-		ABI39_RS09615	0.80	+0.4
2,590,688	-		ABI39_RS09615	0.84	+0.1
2,590,841	-				-0.1
2,590,841	-				-0.2
2,590,854	+				+0.9
2,590,891	+				+0.7
2,590,891	+				+0.2
2,590,914	-		ABI39_RS09620	0.14	+1.4
2,590,959	+		ABI39_RS09620	0.39	-1.1
2,590,959	+		ABI39_RS09620	0.39	+0.3
2,590,983	+		ABI39_RS09620	0.52	-0.4