Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09515

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,568,741	-		ABI39_RS09500	0.31	+1.1
2,568,880	-		ABI39_RS09500	0.70	-0.2
2,568,961	-				+0.9
2,568,986	-				+1.5
2,568,986	-				-0.3
2,568,988	-				+0.8
2,568,990	-				+0.0
2,568,995	-				+0.2
2,568,997	-				+0.2
2,568,999	-				+1.1
2,569,020	-				+0.3
2,569,043	-		ABI39_RS09505	0.11	+0.2
2,569,079	-		ABI39_RS09505	0.21	-0.4
2,569,122	-		ABI39_RS09505	0.33	+0.1
2,569,124	-		ABI39_RS09505	0.33	-0.3
2,569,192	-		ABI39_RS09505	0.52	+0.3
2,569,211	-		ABI39_RS09505	0.57	+1.0
2,569,414	+				-3.7
2,569,511	+		ABI39_RS09510	0.29	-0.4
2,569,511	+		ABI39_RS09510	0.29	-2.4
2,569,572	-		ABI39_RS09510	0.55	-3.7
2,569,665	+				+0.9
2,569,676	-				-2.5
2,569,697	+				-3.5
2,569,700	-				-3.2
2,569,768	-		ABI39_RS09515	0.20	-0.2
2,569,868	-		ABI39_RS09515	0.43	-2.2
2,569,907	+		ABI39_RS09515	0.52	-3.5
2,569,908	-		ABI39_RS09515	0.53	-2.2
2,569,946	-		ABI39_RS09515	0.61	-1.5
2,570,012	+		ABI39_RS09515	0.77	-3.2
2,570,138	+				+1.0
2,570,139	-				-2.2
2,570,257	+		ABI39_RS09520	0.47	-1.2
2,570,260	-		ABI39_RS09520	0.48	+0.6
2,570,260	-		ABI39_RS09520	0.48	-0.2
2,570,345	+		ABI39_RS09520	0.77	+1.6
2,570,390	+				-0.0
2,570,390	+				+0.3
2,570,416	+				+0.4
2,570,434	-				-0.6