Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07815

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,116,930	+		ABI39_RS07810	0.68	+0.1
2,116,931	-		ABI39_RS07810	0.68	-2.3
2,116,931	-		ABI39_RS07810	0.68	-1.4
2,117,088	-		ABI39_RS07810	0.74	-1.5
2,117,126	+		ABI39_RS07810	0.76	-1.2
2,117,235	+		ABI39_RS07810	0.80	-1.2
2,117,236	-		ABI39_RS07810	0.80	-0.9
2,117,300	+		ABI39_RS07810	0.83	-1.0
2,117,519	-				+0.5
2,117,530	-				-0.2
2,117,846	-				-2.1
2,117,892	+				-2.1
2,117,892	+				-1.8
2,117,893	-				-2.6
2,117,924	+				-3.5
2,117,925	-				-2.2
2,117,928	-				-3.4
2,117,945	+				-4.6
2,118,073	+		ABI39_RS07815	0.35	-2.5
2,118,090	+		ABI39_RS07815	0.38	-1.9
2,118,224	+		ABI39_RS07815	0.65	-2.6
2,118,273	+		ABI39_RS07815	0.75	-2.2
2,118,496	-				+0.3
2,118,498	-				-1.1
2,118,515	-				-1.4
2,118,515	-				+0.7
2,118,634	-		ABI39_RS07820	0.40	+1.5
2,118,660	+		ABI39_RS07820	0.47	+0.3
2,118,697	+		ABI39_RS07820	0.56	+0.4
2,118,709	-		ABI39_RS07820	0.59	-0.3
2,118,731	-		ABI39_RS07820	0.65	-0.2
2,118,738	+		ABI39_RS07820	0.67	+0.4
2,118,739	-		ABI39_RS07820	0.67	-0.7
2,118,739	-		ABI39_RS07820	0.67	-0.4
2,118,739	-		ABI39_RS07820	0.67	+0.3
2,118,741	-		ABI39_RS07820	0.67	+1.1
2,118,757	-		ABI39_RS07820	0.72	+0.2
2,118,856	+				-3.3
2,118,930	-				+1.3
2,119,045	+				-0.3
2,119,046	-				+0.4
2,119,103	+		ABI39_RS07825	0.10	-0.0
2,119,103	+		ABI39_RS07825	0.10	+0.5
2,119,138	+		ABI39_RS07825	0.13	+1.1
2,119,138	+		ABI39_RS07825	0.13	+0.4
2,119,159	-		ABI39_RS07825	0.14	+0.6
2,119,193	+		ABI39_RS07825	0.17	-0.1
2,119,307	-		ABI39_RS07825	0.25	+1.5