Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05175

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
1,444,164	-				-3.7
1,444,263	-		ABI39_RS05175	0.20	-4.6
1,444,263	-		ABI39_RS05175	0.20	-2.5
1,444,458	-		ABI39_RS05175	0.46	-3.0
1,444,507	-		ABI39_RS05175	0.52	-3.3
1,444,780	-		ABI39_RS05175	0.88	-3.4
1,444,780	-		ABI39_RS05175	0.88	-2.1
1,444,962	+				-0.2
1,445,040	+				+0.6
1,445,040	+				+1.0
1,445,134	-		ABI39_RS05180	0.14	-1.2
1,445,220	+		ABI39_RS05180	0.21	+1.3
1,445,265	+		ABI39_RS05180	0.25	-1.9
1,445,499	+		ABI39_RS05180	0.43	+1.3
1,445,593	-		ABI39_RS05180	0.51	-0.1
1,445,672	+		ABI39_RS05180	0.57	+0.9
1,445,678	+		ABI39_RS05180	0.57	+1.2
1,445,683	-		ABI39_RS05180	0.58	-0.2
1,445,749	+		ABI39_RS05180	0.63	+0.7
1,445,764	-		ABI39_RS05180	0.64	+0.2
1,445,790	-		ABI39_RS05180	0.66	-2.2
1,445,838	+		ABI39_RS05180	0.70	-1.1