Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04845

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS04835 and ABI39_RS04840 are separated by 2 nucleotidesABI39_RS04840 and ABI39_RS04845 are separated by 357 nucleotidesABI39_RS04845 and ABI39_RS04850 are separated by 12 nucleotidesABI39_RS04850 and ABI39_RS04855 are separated by 144 nucleotides ABI39_RS04835: ABI39_RS04835 - thioredoxin, at 1,350,936 to 1,351,415 _RS04835 ABI39_RS04840: ABI39_RS04840 - hypothetical protein, at 1,351,418 to 1,351,636 _RS04840 ABI39_RS04845: ABI39_RS04845 - outer membrane beta-barrel protein, at 1,351,994 to 1,352,641 _RS04845 ABI39_RS04850: ABI39_RS04850 - hypothetical protein, at 1,352,654 to 1,353,151 _RS04850 ABI39_RS04855: ABI39_RS04855 - glycoside hydrolase family 88 protein, at 1,353,296 to 1,354,594 _RS04855 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1351.100 kb on + strand, within ABI39_RS04835at 1351.123 kb on + strand, within ABI39_RS04835at 1351.187 kb on - strand, within ABI39_RS04835at 1351.254 kb on + strand, within ABI39_RS04835at 1351.277 kb on + strand, within ABI39_RS04835at 1351.340 kb on + strand, within ABI39_RS04835at 1351.410 kb on - strandat 1351.551 kb on + strand, within ABI39_RS04840at 1351.560 kb on + strand, within ABI39_RS04840at 1351.562 kb on + strand, within ABI39_RS04840at 1351.562 kb on + strand, within ABI39_RS04840at 1351.563 kb on - strand, within ABI39_RS04840at 1351.566 kb on + strand, within ABI39_RS04840at 1351.794 kb on + strandat 1351.800 kb on + strandat 1351.840 kb on - strandat 1351.885 kb on + strandat 1351.936 kb on + strandat 1351.972 kb on + strandat 1352.037 kb on - strandat 1352.167 kb on - strand, within ABI39_RS04845at 1352.189 kb on + strand, within ABI39_RS04845at 1352.190 kb on - strand, within ABI39_RS04845at 1352.254 kb on + strand, within ABI39_RS04845at 1352.348 kb on + strand, within ABI39_RS04845at 1352.376 kb on + strand, within ABI39_RS04845at 1352.392 kb on + strand, within ABI39_RS04845at 1352.397 kb on + strand, within ABI39_RS04845at 1352.504 kb on + strand, within ABI39_RS04845at 1352.607 kb on + strandat 1352.659 kb on + strandat 1352.676 kb on + strandat 1352.710 kb on + strand, within ABI39_RS04850at 1352.788 kb on - strand, within ABI39_RS04850at 1352.799 kb on + strand, within ABI39_RS04850at 1352.799 kb on + strand, within ABI39_RS04850at 1352.801 kb on + strand, within ABI39_RS04850at 1352.802 kb on - strand, within ABI39_RS04850at 1352.804 kb on - strand, within ABI39_RS04850at 1352.840 kb on + strand, within ABI39_RS04850at 1352.843 kb on + strand, within ABI39_RS04850at 1352.957 kb on + strand, within ABI39_RS04850at 1352.958 kb on - strand, within ABI39_RS04850at 1352.963 kb on - strand, within ABI39_RS04850at 1352.993 kb on - strand, within ABI39_RS04850at 1353.007 kb on + strand, within ABI39_RS04850at 1353.241 kb on + strandat 1353.242 kb on - strandat 1353.298 kb on - strandat 1353.421 kb on + strandat 1353.426 kb on + strand, within ABI39_RS04855at 1353.431 kb on + strand, within ABI39_RS04855at 1353.506 kb on - strand, within ABI39_RS04855at 1353.506 kb on - strand, within ABI39_RS04855at 1353.527 kb on + strand, within ABI39_RS04855at 1353.571 kb on + strand, within ABI39_RS04855at 1353.575 kb on + strand, within ABI39_RS04855at 1353.576 kb on - strand, within ABI39_RS04855at 1353.577 kb on + strand, within ABI39_RS04855

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C)
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1,351,100 + ABI39_RS04835 0.34 +1.3
1,351,123 + ABI39_RS04835 0.39 +0.8
1,351,187 - ABI39_RS04835 0.52 -1.0
1,351,254 + ABI39_RS04835 0.66 -0.1
1,351,277 + ABI39_RS04835 0.71 +0.3
1,351,340 + ABI39_RS04835 0.84 +1.2
1,351,410 - +0.5
1,351,551 + ABI39_RS04840 0.61 +1.1
1,351,560 + ABI39_RS04840 0.65 +0.6
1,351,562 + ABI39_RS04840 0.66 -0.8
1,351,562 + ABI39_RS04840 0.66 +0.5
1,351,563 - ABI39_RS04840 0.66 +1.8
1,351,566 + ABI39_RS04840 0.68 -0.4
1,351,794 + -5.1
1,351,800 + +0.7
1,351,840 - +1.1
1,351,885 + +1.1
1,351,936 + +0.0
1,351,972 + +0.9
1,352,037 - -0.2
1,352,167 - ABI39_RS04845 0.27 -0.0
1,352,189 + ABI39_RS04845 0.30 -1.8
1,352,190 - ABI39_RS04845 0.30 -0.2
1,352,254 + ABI39_RS04845 0.40 -0.3
1,352,348 + ABI39_RS04845 0.55 -1.6
1,352,376 + ABI39_RS04845 0.59 -0.1
1,352,392 + ABI39_RS04845 0.61 -0.4
1,352,397 + ABI39_RS04845 0.62 -0.1
1,352,504 + ABI39_RS04845 0.79 +2.2
1,352,607 + -1.4
1,352,659 + +1.2
1,352,676 + -0.1
1,352,710 + ABI39_RS04850 0.11 -0.4
1,352,788 - ABI39_RS04850 0.27 -0.2
1,352,799 + ABI39_RS04850 0.29 +1.3
1,352,799 + ABI39_RS04850 0.29 -0.2
1,352,801 + ABI39_RS04850 0.30 +1.1
1,352,802 - ABI39_RS04850 0.30 -0.1
1,352,804 - ABI39_RS04850 0.30 -1.6
1,352,840 + ABI39_RS04850 0.37 +1.8
1,352,843 + ABI39_RS04850 0.38 -0.2
1,352,957 + ABI39_RS04850 0.61 -1.5
1,352,958 - ABI39_RS04850 0.61 +0.4
1,352,963 - ABI39_RS04850 0.62 +0.8
1,352,993 - ABI39_RS04850 0.68 -0.5
1,353,007 + ABI39_RS04850 0.71 +0.6
1,353,241 + -0.1
1,353,242 - -2.7
1,353,298 - -0.4
1,353,421 + -0.8
1,353,426 + ABI39_RS04855 0.10 +0.1
1,353,431 + ABI39_RS04855 0.10 -0.9
1,353,506 - ABI39_RS04855 0.16 -1.3
1,353,506 - ABI39_RS04855 0.16 +1.2
1,353,527 + ABI39_RS04855 0.18 +1.1
1,353,571 + ABI39_RS04855 0.21 +2.1
1,353,575 + ABI39_RS04855 0.21 -0.1
1,353,576 - ABI39_RS04855 0.22 -0.9
1,353,577 + ABI39_RS04855 0.22 -0.2

Or see this region's nucleotide sequence