Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04475

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
1,259,462	+		ABI39_RS04470	0.42	+0.6
1,259,463	-		ABI39_RS04470	0.42	-3.6
1,259,615	-		ABI39_RS04470	0.53	-4.2
1,259,737	-		ABI39_RS04470	0.61	-3.4
1,259,957	+		ABI39_RS04470	0.77	-0.5
1,259,999	-		ABI39_RS04470	0.80	-3.5
1,260,227	-				-4.2
1,260,278	-				-3.5
1,260,298	-				-4.1
1,260,299	+				-0.5
1,260,300	-				-3.0
1,260,404	+				-0.6
1,260,444	-				-5.0
1,260,448	-				-3.7
1,260,449	+				-5.2
1,260,449	+				-4.5
1,260,450	-				-4.2
1,260,450	-				-4.9
1,260,452	+				-2.2
1,260,453	-				-4.5
1,260,617	-				-4.4
1,260,632	-		ABI39_RS04475	0.10	-4.0
1,260,879	-		ABI39_RS04475	0.22	-2.8
1,260,955	+		ABI39_RS04475	0.26	-3.5
1,260,956	-		ABI39_RS04475	0.26	-5.4
1,261,025	-		ABI39_RS04475	0.29	-4.4
1,261,084	-		ABI39_RS04475	0.32	-4.2
1,261,084	-		ABI39_RS04475	0.32	-5.6
1,261,088	-		ABI39_RS04475	0.32	-5.8
1,261,246	+		ABI39_RS04475	0.40	-5.0
1,261,330	+		ABI39_RS04475	0.44	-5.2
1,261,436	-		ABI39_RS04475	0.49	-3.9
1,261,478	-		ABI39_RS04475	0.51	-5.1
1,261,517	+		ABI39_RS04475	0.53	-5.1
1,261,517	+		ABI39_RS04475	0.53	-6.1
1,261,518	-		ABI39_RS04475	0.53	-5.9
1,261,660	+		ABI39_RS04475	0.60	-5.2
1,261,661	-		ABI39_RS04475	0.60	-5.8
1,261,663	+		ABI39_RS04475	0.60	-4.4
1,261,664	-		ABI39_RS04475	0.60	-3.4
1,261,720	+		ABI39_RS04475	0.63	-5.4
1,261,865	-		ABI39_RS04475	0.70	-5.6
1,261,936	-		ABI39_RS04475	0.73	-2.2
1,261,941	+		ABI39_RS04475	0.73	-4.4
1,262,002	+		ABI39_RS04475	0.76	-3.7
1,262,002	+		ABI39_RS04475	0.76	-4.4
1,262,002	+		ABI39_RS04475	0.76	-3.4
1,262,006	-		ABI39_RS04475	0.76	-4.0
1,262,053	+		ABI39_RS04475	0.79	-4.7
1,262,054	-		ABI39_RS04475	0.79	-1.8
1,262,087	-		ABI39_RS04475	0.80	-4.7
1,262,112	-		ABI39_RS04475	0.81	-4.5
1,262,124	-		ABI39_RS04475	0.82	-5.0
1,262,185	+		ABI39_RS04475	0.85	-3.8
1,262,186	-		ABI39_RS04475	0.85	-1.8
1,262,308	+				-3.8
1,262,316	+				-6.0
1,262,421	-				-6.0
1,262,525	+				-0.9
1,262,544	-				-1.3
1,262,787	+		ABI39_RS04480	0.24	-0.4
1,262,793	+		ABI39_RS04480	0.24	-1.2
1,262,877	+		ABI39_RS04480	0.32	+0.5
1,263,021	+		ABI39_RS04480	0.44	-0.0
1,263,104	+		ABI39_RS04480	0.52	-2.0
1,263,239	-		ABI39_RS04480	0.64	-1.3
1,263,388	-		ABI39_RS04480	0.77	+0.1
1,263,393	+		ABI39_RS04480	0.77	-0.9