Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04135

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
1,172,585	-		ABI39_RS04125	0.47	-0.7
1,172,619	-		ABI39_RS04125	0.51	-1.3
1,172,849	-		ABI39_RS04125	0.76	+0.0
1,172,935	+		ABI39_RS04125	0.86	-2.4
1,172,955	-		ABI39_RS04125	0.88	-0.6
1,172,980	+				-0.1
1,172,992	-				+0.1
1,173,012	+				-1.2
1,173,020	-				+0.5
1,173,028	+				-1.1
1,173,029	-				-1.1
1,173,096	+				-0.9
1,173,136	+				-0.6
1,173,528	-				-1.2
1,173,609	+				-0.2
1,173,611	+				-3.9
1,173,611	+				-1.8
1,173,612	-				-2.0
1,173,631	+				-1.4
1,173,693	-		ABI39_RS04135	0.12	-2.4
1,173,763	+		ABI39_RS04135	0.19	-2.8
1,173,763	+		ABI39_RS04135	0.19	-2.9
1,173,849	+		ABI39_RS04135	0.27	-2.6
1,173,995	+		ABI39_RS04135	0.41	-1.2
1,173,995	+		ABI39_RS04135	0.41	-2.3
1,174,004	+		ABI39_RS04135	0.42	+0.2
1,174,127	+		ABI39_RS04135	0.54	-2.7
1,174,185	+		ABI39_RS04135	0.59	+1.8
1,174,194	-		ABI39_RS04135	0.60	-1.9
1,174,212	+		ABI39_RS04135	0.62	-2.3
1,174,369	+		ABI39_RS04135	0.77	-2.6
1,174,369	+		ABI39_RS04135	0.77	-2.2
1,174,374	+		ABI39_RS04135	0.77	-2.6
1,174,374	+		ABI39_RS04135	0.77	-1.6
1,174,407	-		ABI39_RS04135	0.80	-1.8
1,174,428	-		ABI39_RS04135	0.82	-0.6
1,174,430	-		ABI39_RS04135	0.83	-2.1
1,174,443	+		ABI39_RS04135	0.84	-0.5
1,174,444	-		ABI39_RS04135	0.84	-2.1
1,174,449	-		ABI39_RS04135	0.84	-2.1
1,174,449	-		ABI39_RS04135	0.84	-3.5
1,174,449	-		ABI39_RS04135	0.84	-2.4
1,174,481	+		ABI39_RS04135	0.87	-2.6
1,174,481	+		ABI39_RS04135	0.87	-3.0
1,174,524	-				-2.5
1,174,526	+				-1.1
1,174,608	-				-2.0
1,174,676	+				+0.7
1,174,679	-				-1.7
1,174,686	-				+1.0
1,174,701	+				+0.4
1,174,829	-		ABI39_RS04140	0.32	-0.5
1,174,829	-		ABI39_RS04140	0.32	+0.4
1,174,829	-		ABI39_RS04140	0.32	-0.7
1,174,829	-		ABI39_RS04140	0.32	-0.4
1,174,877	-		ABI39_RS04140	0.43	+0.9
1,174,964	-		ABI39_RS04140	0.65	+0.6
1,174,966	-		ABI39_RS04140	0.65	+1.1
1,175,061	+		ABI39_RS04140	0.88	-1.0
1,175,092	+				-0.7
1,175,112	-				-1.2
1,175,113	+				-1.7
1,175,113	+				+1.5
1,175,114	-				-0.4
1,175,117	+				+0.5
1,175,155	+				-0.0
1,175,155	+				+0.7
1,175,156	-				+1.3
1,175,195	+				-0.2
1,175,319	-		ABI39_RS04145	0.34	-2.2
1,175,359	-		ABI39_RS04145	0.43	-0.2
1,175,402	+		ABI39_RS04145	0.52	-1.2
1,175,409	-		ABI39_RS04145	0.54	-1.2
1,175,427	-		ABI39_RS04145	0.57	-1.2