Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01365 and ABI39_RS01370 are separated by 26 nucleotides ABI39_RS01370 and ABI39_RS01375 are separated by 6 nucleotides
ABI39_RS01365: ABI39_RS01365 - TolC family protein, at 419,755 to 421,218
_RS01365
ABI39_RS01370: ABI39_RS01370 - efflux RND transporter periplasmic adaptor subunit, at 421,245 to 422,231
_RS01370
ABI39_RS01375: ABI39_RS01375 - ABC transporter permease, at 422,238 to 423,413
_RS01375
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 420.432 kb on - strand, within ABI39_RS01365 at 420.432 kb on - strand, within ABI39_RS01365 at 420.543 kb on - strand, within ABI39_RS01365 at 420.547 kb on - strand, within ABI39_RS01365 at 420.566 kb on + strand, within ABI39_RS01365 at 420.645 kb on - strand, within ABI39_RS01365 at 420.656 kb on + strand, within ABI39_RS01365 at 420.701 kb on + strand, within ABI39_RS01365 at 420.889 kb on + strand, within ABI39_RS01365 at 421.060 kb on + strand, within ABI39_RS01365 at 421.152 kb on - strand at 421.212 kb on + strand at 421.287 kb on - strand at 421.287 kb on - strand at 421.871 kb on - strand, within ABI39_RS01370 at 421.949 kb on + strand, within ABI39_RS01370 at 422.081 kb on + strand, within ABI39_RS01370 at 422.082 kb on - strand, within ABI39_RS01370 at 422.085 kb on + strand, within ABI39_RS01370 at 422.086 kb on - strand, within ABI39_RS01370 at 422.087 kb on + strand, within ABI39_RS01370 at 422.087 kb on + strand, within ABI39_RS01370 at 422.107 kb on - strand, within ABI39_RS01370 at 422.313 kb on + strand at 422.364 kb on - strand, within ABI39_RS01375 at 422.548 kb on - strand, within ABI39_RS01375 at 422.553 kb on - strand, within ABI39_RS01375 at 422.619 kb on + strand, within ABI39_RS01375 at 422.650 kb on - strand, within ABI39_RS01375 at 422.708 kb on - strand, within ABI39_RS01375 at 422.723 kb on + strand, within ABI39_RS01375 at 422.835 kb on - strand, within ABI39_RS01375 at 423.050 kb on - strand, within ABI39_RS01375 at 423.076 kb on + strand, within ABI39_RS01375 at 423.080 kb on - strand, within ABI39_RS01375 at 423.207 kb on - strand, within ABI39_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 420,432 - ABI39_RS01365 0.46 +0.9 420,432 - ABI39_RS01365 0.46 -0.2 420,543 - ABI39_RS01365 0.54 +0.8 420,547 - ABI39_RS01365 0.54 -0.5 420,566 + ABI39_RS01365 0.55 -0.4 420,645 - ABI39_RS01365 0.61 -0.5 420,656 + ABI39_RS01365 0.62 +0.4 420,701 + ABI39_RS01365 0.65 +0.2 420,889 + ABI39_RS01365 0.77 +0.9 421,060 + ABI39_RS01365 0.89 -0.2 421,152 - -0.0 421,212 + -0.3 421,287 - +1.8 421,287 - -0.8 421,871 - ABI39_RS01370 0.63 +0.0 421,949 + ABI39_RS01370 0.71 +0.3 422,081 + ABI39_RS01370 0.85 -2.2 422,082 - ABI39_RS01370 0.85 -1.3 422,085 + ABI39_RS01370 0.85 -0.2 422,086 - ABI39_RS01370 0.85 -1.1 422,087 + ABI39_RS01370 0.85 -0.6 422,087 + ABI39_RS01370 0.85 +0.5 422,107 - ABI39_RS01370 0.87 -0.1 422,313 + -0.1 422,364 - ABI39_RS01375 0.11 -0.3 422,548 - ABI39_RS01375 0.26 +0.8 422,553 - ABI39_RS01375 0.27 +2.2 422,619 + ABI39_RS01375 0.32 -0.4 422,650 - ABI39_RS01375 0.35 +2.1 422,708 - ABI39_RS01375 0.40 -0.1 422,723 + ABI39_RS01375 0.41 -3.3 422,835 - ABI39_RS01375 0.51 +1.2 423,050 - ABI39_RS01375 0.69 +1.0 423,076 + ABI39_RS01375 0.71 +0.1 423,080 - ABI39_RS01375 0.72 +0.8 423,207 - ABI39_RS01375 0.82 -0.4
Or see this region's nucleotide sequence