Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01010 and ABI39_RS01015 overlap by 23 nucleotides ABI39_RS01015 and ABI39_RS01020 overlap by 4 nucleotides ABI39_RS01020 and ABI39_RS01025 are separated by 15 nucleotides
ABI39_RS01010: ABI39_RS01010 - right-handed parallel beta-helix repeat-containing protein, at 327,078 to 328,562
_RS01010
ABI39_RS01015: ABI39_RS01015 - DUF4450 domain-containing protein, at 328,540 to 329,238
_RS01015
ABI39_RS01020: ABI39_RS01020 - hypothetical protein, at 329,235 to 330,038
_RS01020
ABI39_RS01025: ABI39_RS01025 - glycoside hydrolase family 28 protein, at 330,054 to 331,481
_RS01025
Position (kb) 328
329
330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.555 kb on - strand, within ABI39_RS01010 at 327.591 kb on + strand, within ABI39_RS01010 at 327.592 kb on - strand, within ABI39_RS01010 at 327.694 kb on + strand, within ABI39_RS01010 at 327.694 kb on + strand, within ABI39_RS01010 at 327.796 kb on + strand, within ABI39_RS01010 at 327.891 kb on - strand, within ABI39_RS01010 at 327.992 kb on + strand, within ABI39_RS01010 at 327.995 kb on + strand, within ABI39_RS01010 at 328.042 kb on - strand, within ABI39_RS01010 at 328.193 kb on + strand, within ABI39_RS01010 at 328.198 kb on - strand, within ABI39_RS01010 at 328.203 kb on - strand, within ABI39_RS01010 at 328.306 kb on + strand, within ABI39_RS01010 at 328.322 kb on - strand, within ABI39_RS01010 at 328.561 kb on - strand at 328.609 kb on - strand at 328.738 kb on - strand, within ABI39_RS01015 at 328.800 kb on + strand, within ABI39_RS01015 at 328.800 kb on + strand, within ABI39_RS01015 at 328.812 kb on + strand, within ABI39_RS01015 at 328.943 kb on + strand, within ABI39_RS01015 at 328.968 kb on + strand, within ABI39_RS01015 at 328.971 kb on + strand, within ABI39_RS01015 at 329.016 kb on - strand, within ABI39_RS01015 at 329.220 kb on + strand at 329.338 kb on + strand, within ABI39_RS01020 at 329.382 kb on - strand, within ABI39_RS01020 at 329.382 kb on - strand, within ABI39_RS01020 at 329.401 kb on + strand, within ABI39_RS01020 at 329.464 kb on + strand, within ABI39_RS01020 at 329.517 kb on - strand, within ABI39_RS01020 at 329.718 kb on - strand, within ABI39_RS01020 at 329.737 kb on + strand, within ABI39_RS01020 at 329.778 kb on + strand, within ABI39_RS01020 at 329.981 kb on + strand at 329.981 kb on + strand at 330.114 kb on + strand at 330.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 327,555 - ABI39_RS01010 0.32 +0.3 327,591 + ABI39_RS01010 0.35 +0.4 327,592 - ABI39_RS01010 0.35 +0.4 327,694 + ABI39_RS01010 0.41 +0.7 327,694 + ABI39_RS01010 0.41 -1.1 327,796 + ABI39_RS01010 0.48 +0.8 327,891 - ABI39_RS01010 0.55 +0.6 327,992 + ABI39_RS01010 0.62 -1.0 327,995 + ABI39_RS01010 0.62 -0.3 328,042 - ABI39_RS01010 0.65 +0.6 328,193 + ABI39_RS01010 0.75 -0.6 328,198 - ABI39_RS01010 0.75 -1.1 328,203 - ABI39_RS01010 0.76 +1.1 328,306 + ABI39_RS01010 0.83 -0.7 328,322 - ABI39_RS01010 0.84 -1.7 328,561 - +0.2 328,609 - -0.1 328,738 - ABI39_RS01015 0.28 -0.5 328,800 + ABI39_RS01015 0.37 -0.5 328,800 + ABI39_RS01015 0.37 +0.7 328,812 + ABI39_RS01015 0.39 -1.4 328,943 + ABI39_RS01015 0.58 +1.4 328,968 + ABI39_RS01015 0.61 +0.3 328,971 + ABI39_RS01015 0.62 -0.1 329,016 - ABI39_RS01015 0.68 +1.1 329,220 + +0.9 329,338 + ABI39_RS01020 0.13 +0.3 329,382 - ABI39_RS01020 0.18 +1.1 329,382 - ABI39_RS01020 0.18 +0.4 329,401 + ABI39_RS01020 0.21 +1.5 329,464 + ABI39_RS01020 0.28 +0.7 329,517 - ABI39_RS01020 0.35 -0.0 329,718 - ABI39_RS01020 0.60 +1.8 329,737 + ABI39_RS01020 0.62 -0.8 329,778 + ABI39_RS01020 0.68 -3.5 329,981 + +0.7 329,981 + +1.0 330,114 + +0.0 330,152 + -0.7
Or see this region's nucleotide sequence