Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01160

Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS01155 and ABI39_RS01160 are separated by 90 nucleotidesABI39_RS01160 and ABI39_RS01165 are separated by 241 nucleotides ABI39_RS01155: ABI39_RS01155 - TonB-dependent receptor, at 363,426 to 366,497 _RS01155 ABI39_RS01160: ABI39_RS01160 - alpha-L-fucosidase, at 366,588 to 368,234 _RS01160 ABI39_RS01165: ABI39_RS01165 - helix-turn-helix transcriptional regulator, at 368,476 to 369,336 _RS01165 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 365.589 kb on + strand, within ABI39_RS01155at 365.687 kb on + strand, within ABI39_RS01155at 365.702 kb on - strand, within ABI39_RS01155at 365.759 kb on + strand, within ABI39_RS01155at 365.759 kb on + strand, within ABI39_RS01155at 365.764 kb on + strand, within ABI39_RS01155at 365.764 kb on + strand, within ABI39_RS01155at 365.769 kb on - strand, within ABI39_RS01155at 365.891 kb on + strand, within ABI39_RS01155at 366.195 kb on + strandat 366.249 kb on + strandat 366.250 kb on - strandat 366.254 kb on - strandat 366.401 kb on + strandat 366.422 kb on + strandat 366.428 kb on - strandat 366.477 kb on - strandat 366.568 kb on - strandat 366.573 kb on + strandat 366.606 kb on + strandat 366.694 kb on - strandat 366.792 kb on - strand, within ABI39_RS01160at 366.802 kb on + strand, within ABI39_RS01160at 366.941 kb on - strand, within ABI39_RS01160at 366.941 kb on - strand, within ABI39_RS01160at 366.984 kb on + strand, within ABI39_RS01160at 366.984 kb on + strand, within ABI39_RS01160at 367.038 kb on - strand, within ABI39_RS01160at 367.077 kb on + strand, within ABI39_RS01160at 367.087 kb on - strand, within ABI39_RS01160at 367.103 kb on + strand, within ABI39_RS01160at 367.104 kb on - strand, within ABI39_RS01160at 367.136 kb on - strand, within ABI39_RS01160at 367.181 kb on - strand, within ABI39_RS01160at 367.181 kb on - strand, within ABI39_RS01160at 367.181 kb on - strand, within ABI39_RS01160at 367.184 kb on + strand, within ABI39_RS01160at 367.420 kb on + strand, within ABI39_RS01160at 367.435 kb on + strand, within ABI39_RS01160at 367.451 kb on + strand, within ABI39_RS01160at 367.535 kb on - strand, within ABI39_RS01160at 367.603 kb on + strand, within ABI39_RS01160at 367.604 kb on - strand, within ABI39_RS01160at 367.781 kb on - strand, within ABI39_RS01160at 367.801 kb on + strand, within ABI39_RS01160at 367.854 kb on - strand, within ABI39_RS01160at 367.962 kb on - strand, within ABI39_RS01160at 367.962 kb on - strand, within ABI39_RS01160at 367.964 kb on - strand, within ABI39_RS01160at 368.067 kb on - strand, within ABI39_RS01160at 368.086 kb on + strandat 368.109 kb on - strandat 368.238 kb on - strandat 368.417 kb on + strandat 368.504 kb on + strandat 368.505 kb on - strandat 368.585 kb on - strand, within ABI39_RS01165at 368.585 kb on - strand, within ABI39_RS01165at 368.589 kb on + strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.640 kb on - strand, within ABI39_RS01165at 368.654 kb on + strand, within ABI39_RS01165at 368.657 kb on - strand, within ABI39_RS01165at 368.683 kb on - strand, within ABI39_RS01165at 368.714 kb on - strand, within ABI39_RS01165at 368.716 kb on + strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.727 kb on - strand, within ABI39_RS01165at 368.729 kb on - strand, within ABI39_RS01165at 368.808 kb on - strand, within ABI39_RS01165at 368.817 kb on + strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.835 kb on - strand, within ABI39_RS01165at 368.958 kb on - strand, within ABI39_RS01165at 368.960 kb on + strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 369.063 kb on + strand, within ABI39_RS01165at 369.064 kb on - strand, within ABI39_RS01165at 369.164 kb on - strand, within ABI39_RS01165at 369.165 kb on + strand, within ABI39_RS01165at 369.198 kb on - strand, within ABI39_RS01165at 369.233 kb on + strand, within ABI39_RS01165at 369.234 kb on - strand, within ABI39_RS01165

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C)
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365,589 + ABI39_RS01155 0.70 +0.5
365,687 + ABI39_RS01155 0.74 -0.7
365,702 - ABI39_RS01155 0.74 +0.5
365,759 + ABI39_RS01155 0.76 -0.4
365,759 + ABI39_RS01155 0.76 +0.8
365,764 + ABI39_RS01155 0.76 -0.4
365,764 + ABI39_RS01155 0.76 +0.1
365,769 - ABI39_RS01155 0.76 +0.4
365,891 + ABI39_RS01155 0.80 -1.0
366,195 + -1.1
366,249 + +0.9
366,250 - -0.5
366,254 - +0.1
366,401 + -0.3
366,422 + +0.2
366,428 - +0.5
366,477 - +0.3
366,568 - -0.3
366,573 + +0.1
366,606 + -0.5
366,694 - -1.1
366,792 - ABI39_RS01160 0.12 +0.3
366,802 + ABI39_RS01160 0.13 +0.0
366,941 - ABI39_RS01160 0.21 +0.8
366,941 - ABI39_RS01160 0.21 -0.7
366,984 + ABI39_RS01160 0.24 +0.2
366,984 + ABI39_RS01160 0.24 +0.8
367,038 - ABI39_RS01160 0.27 +0.6
367,077 + ABI39_RS01160 0.30 +1.3
367,087 - ABI39_RS01160 0.30 -0.2
367,103 + ABI39_RS01160 0.31 +0.0
367,104 - ABI39_RS01160 0.31 +0.5
367,136 - ABI39_RS01160 0.33 +0.5
367,181 - ABI39_RS01160 0.36 -0.0
367,181 - ABI39_RS01160 0.36 +0.7
367,181 - ABI39_RS01160 0.36 -3.8
367,184 + ABI39_RS01160 0.36 +0.2
367,420 + ABI39_RS01160 0.51 -0.2
367,435 + ABI39_RS01160 0.51 -0.1
367,451 + ABI39_RS01160 0.52 +0.4
367,535 - ABI39_RS01160 0.57 -0.1
367,603 + ABI39_RS01160 0.62 -0.3
367,604 - ABI39_RS01160 0.62 +0.7
367,781 - ABI39_RS01160 0.72 +1.0
367,801 + ABI39_RS01160 0.74 +0.1
367,854 - ABI39_RS01160 0.77 +0.2
367,962 - ABI39_RS01160 0.83 +0.8
367,962 - ABI39_RS01160 0.83 +0.8
367,964 - ABI39_RS01160 0.84 -0.5
368,067 - ABI39_RS01160 0.90 -0.5
368,086 + -0.2
368,109 - -1.0
368,238 - -1.0
368,417 + -0.9
368,504 + -0.1
368,505 - +0.7
368,585 - ABI39_RS01165 0.13 -1.1
368,585 - ABI39_RS01165 0.13 +0.2
368,589 + ABI39_RS01165 0.13 +0.3
368,590 - ABI39_RS01165 0.13 +0.4
368,590 - ABI39_RS01165 0.13 -0.3
368,640 - ABI39_RS01165 0.19 +0.4
368,654 + ABI39_RS01165 0.21 -1.3
368,657 - ABI39_RS01165 0.21 -0.6
368,683 - ABI39_RS01165 0.24 -1.0
368,714 - ABI39_RS01165 0.28 +0.2
368,716 + ABI39_RS01165 0.28 +0.5
368,725 - ABI39_RS01165 0.29 -0.8
368,725 - ABI39_RS01165 0.29 +0.2
368,727 - ABI39_RS01165 0.29 -0.3
368,729 - ABI39_RS01165 0.29 -0.3
368,808 - ABI39_RS01165 0.39 -0.5
368,817 + ABI39_RS01165 0.40 +0.0
368,818 - ABI39_RS01165 0.40 +0.1
368,818 - ABI39_RS01165 0.40 -0.1
368,835 - ABI39_RS01165 0.42 -0.8
368,958 - ABI39_RS01165 0.56 +1.2
368,960 + ABI39_RS01165 0.56 +1.1
368,961 - ABI39_RS01165 0.56 -0.8
368,961 - ABI39_RS01165 0.56 +0.7
368,961 - ABI39_RS01165 0.56 +0.2
369,063 + ABI39_RS01165 0.68 +1.2
369,064 - ABI39_RS01165 0.68 +0.4
369,164 - ABI39_RS01165 0.80 +0.2
369,165 + ABI39_RS01165 0.80 -0.8
369,198 - ABI39_RS01165 0.84 +0.6
369,233 + ABI39_RS01165 0.88 +0.4
369,234 - ABI39_RS01165 0.88 -1.1

Or see this region's nucleotide sequence