Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14610

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14605 and A4249_RS14610 are separated by 76 nucleotidesA4249_RS14610 and A4249_RS14615 overlap by 1 nucleotidesA4249_RS14615 and A4249_RS14620 are separated by 83 nucleotides A4249_RS14605: A4249_RS14605 - glycosyltransferase family 2 protein, at 2,958,839 to 2,959,567 _RS14605 A4249_RS14610: A4249_RS14610 - glycosyltransferase family 39 protein, at 2,959,644 to 2,961,332 _RS14610 A4249_RS14615: A4249_RS14615 - hydroxymethylglutaryl-CoA lyase, at 2,961,332 to 2,962,246 _RS14615 A4249_RS14620: A4249_RS14620 - hypothetical protein, at 2,962,330 to 2,962,755 _RS14620 Position (kb) 2959 2960 2961 2962Strain fitness (log2 ratio) -3 -2 -1 0 1at 2958.694 kb on + strandat 2958.694 kb on + strandat 2958.694 kb on + strandat 2958.694 kb on + strandat 2958.694 kb on + strandat 2958.695 kb on - strandat 2958.695 kb on - strandat 2958.840 kb on + strandat 2958.840 kb on + strandat 2958.840 kb on + strandat 2958.840 kb on + strandat 2958.840 kb on + strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.841 kb on - strandat 2958.939 kb on + strand, within A4249_RS14605at 2958.939 kb on + strand, within A4249_RS14605at 2958.940 kb on - strand, within A4249_RS14605at 2958.940 kb on - strand, within A4249_RS14605at 2958.940 kb on - strand, within A4249_RS14605at 2958.984 kb on + strand, within A4249_RS14605at 2958.985 kb on - strand, within A4249_RS14605at 2958.985 kb on - strand, within A4249_RS14605at 2958.985 kb on - strand, within A4249_RS14605at 2958.985 kb on - strand, within A4249_RS14605at 2959.047 kb on + strand, within A4249_RS14605at 2959.047 kb on + strand, within A4249_RS14605at 2959.047 kb on + strand, within A4249_RS14605at 2959.048 kb on - strand, within A4249_RS14605at 2959.458 kb on + strand, within A4249_RS14605at 2959.459 kb on - strand, within A4249_RS14605at 2959.459 kb on - strand, within A4249_RS14605at 2959.578 kb on + strandat 2959.578 kb on + strandat 2959.579 kb on - strandat 2959.579 kb on - strandat 2959.579 kb on - strandat 2959.620 kb on + strandat 2959.621 kb on - strandat 2959.621 kb on - strandat 2959.632 kb on - strandat 2959.632 kb on - strandat 2959.632 kb on - strandat 2959.632 kb on - strandat 2959.632 kb on - strandat 2959.812 kb on + strandat 2959.812 kb on + strandat 2959.812 kb on + strandat 2959.812 kb on + strandat 2959.812 kb on + strandat 2959.813 kb on - strand, within A4249_RS14610at 2959.813 kb on - strand, within A4249_RS14610at 2959.813 kb on - strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2959.866 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.136 kb on + strand, within A4249_RS14610at 2960.177 kb on + strand, within A4249_RS14610at 2960.298 kb on + strand, within A4249_RS14610at 2960.298 kb on + strand, within A4249_RS14610at 2960.298 kb on + strand, within A4249_RS14610at 2960.298 kb on + strand, within A4249_RS14610at 2960.298 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.469 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.634 kb on + strand, within A4249_RS14610at 2960.769 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2960.784 kb on + strand, within A4249_RS14610at 2961.241 kb on - strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.246 kb on + strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.247 kb on - strandat 2961.279 kb on + strandat 2961.279 kb on + strandat 2961.279 kb on + strandat 2961.280 kb on - strandat 2961.331 kb on - strandat 2962.277 kb on + strandat 2962.277 kb on + strandat 2962.278 kb on - strandat 2962.297 kb on + strandat 2962.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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2,958,694 + -0.2
2,958,694 + +0.0
2,958,694 + +0.2
2,958,694 + -0.2
2,958,694 + -0.1
2,958,695 - -1.2
2,958,695 - -0.3
2,958,840 + -0.2
2,958,840 + +0.1
2,958,840 + -0.3
2,958,840 + -0.1
2,958,840 + -0.1
2,958,841 - -0.3
2,958,841 - -0.2
2,958,841 - -0.5
2,958,841 - -0.1
2,958,841 - -0.7
2,958,841 - -0.3
2,958,841 - -0.8
2,958,939 + A4249_RS14605 0.14 -1.7
2,958,939 + A4249_RS14605 0.14 -0.4
2,958,940 - A4249_RS14605 0.14 +0.4
2,958,940 - A4249_RS14605 0.14 +0.3
2,958,940 - A4249_RS14605 0.14 -1.0
2,958,984 + A4249_RS14605 0.20 +0.3
2,958,985 - A4249_RS14605 0.20 +0.1
2,958,985 - A4249_RS14605 0.20 -1.0
2,958,985 - A4249_RS14605 0.20 -1.4
2,958,985 - A4249_RS14605 0.20 -0.1
2,959,047 + A4249_RS14605 0.29 -2.3
2,959,047 + A4249_RS14605 0.29 -0.2
2,959,047 + A4249_RS14605 0.29 +0.2
2,959,048 - A4249_RS14605 0.29 +0.2
2,959,458 + A4249_RS14605 0.85 +0.0
2,959,459 - A4249_RS14605 0.85 -0.3
2,959,459 - A4249_RS14605 0.85 -0.0
2,959,578 + +0.0
2,959,578 + +0.2
2,959,579 - -0.4
2,959,579 - +0.8
2,959,579 - +0.0
2,959,620 + +0.0
2,959,621 - -0.5
2,959,621 - -1.1
2,959,632 - +0.6
2,959,632 - +0.1
2,959,632 - -0.8
2,959,632 - -0.1
2,959,632 - +1.1
2,959,812 + +0.7
2,959,812 + -0.6
2,959,812 + +0.3
2,959,812 + -0.7
2,959,812 + -0.3
2,959,813 - A4249_RS14610 0.10 -0.9
2,959,813 - A4249_RS14610 0.10 -1.2
2,959,813 - A4249_RS14610 0.10 +0.5
2,959,866 + A4249_RS14610 0.13 -0.0
2,959,866 + A4249_RS14610 0.13 -0.6
2,959,866 + A4249_RS14610 0.13 -1.4
2,959,866 + A4249_RS14610 0.13 -0.8
2,959,866 + A4249_RS14610 0.13 -0.6
2,959,866 + A4249_RS14610 0.13 -1.9
2,960,136 + A4249_RS14610 0.29 +0.3
2,960,136 + A4249_RS14610 0.29 -0.1
2,960,136 + A4249_RS14610 0.29 -3.4
2,960,136 + A4249_RS14610 0.29 +0.1
2,960,136 + A4249_RS14610 0.29 -0.7
2,960,136 + A4249_RS14610 0.29 +0.3
2,960,136 + A4249_RS14610 0.29 -0.5
2,960,136 + A4249_RS14610 0.29 +0.9
2,960,136 + A4249_RS14610 0.29 -0.3
2,960,136 + A4249_RS14610 0.29 -0.6
2,960,136 + A4249_RS14610 0.29 -0.9
2,960,136 + A4249_RS14610 0.29 -0.3
2,960,136 + A4249_RS14610 0.29 -0.6
2,960,136 + A4249_RS14610 0.29 -0.3
2,960,136 + A4249_RS14610 0.29 -0.4
2,960,136 + A4249_RS14610 0.29 -0.3
2,960,136 + A4249_RS14610 0.29 -0.2
2,960,136 + A4249_RS14610 0.29 +0.3
2,960,136 + A4249_RS14610 0.29 +0.1
2,960,136 + A4249_RS14610 0.29 -0.5
2,960,136 + A4249_RS14610 0.29 -0.3
2,960,136 + A4249_RS14610 0.29 +0.4
2,960,136 + A4249_RS14610 0.29 +0.3
2,960,177 + A4249_RS14610 0.32 -0.6
2,960,298 + A4249_RS14610 0.39 -1.2
2,960,298 + A4249_RS14610 0.39 +0.3
2,960,298 + A4249_RS14610 0.39 +0.3
2,960,298 + A4249_RS14610 0.39 -0.5
2,960,298 + A4249_RS14610 0.39 -0.2
2,960,469 + A4249_RS14610 0.49 +0.5
2,960,469 + A4249_RS14610 0.49 -0.4
2,960,469 + A4249_RS14610 0.49 -0.4
2,960,469 + A4249_RS14610 0.49 +0.3
2,960,469 + A4249_RS14610 0.49 -0.6
2,960,469 + A4249_RS14610 0.49 +0.5
2,960,469 + A4249_RS14610 0.49 -1.2
2,960,469 + A4249_RS14610 0.49 -1.0
2,960,469 + A4249_RS14610 0.49 -0.5
2,960,469 + A4249_RS14610 0.49 +0.1
2,960,469 + A4249_RS14610 0.49 -0.3
2,960,469 + A4249_RS14610 0.49 +0.1
2,960,634 + A4249_RS14610 0.59 -1.2
2,960,634 + A4249_RS14610 0.59 +0.6
2,960,634 + A4249_RS14610 0.59 -0.6
2,960,634 + A4249_RS14610 0.59 -1.4
2,960,634 + A4249_RS14610 0.59 +0.5
2,960,634 + A4249_RS14610 0.59 -0.1
2,960,769 + A4249_RS14610 0.67 +0.0
2,960,784 + A4249_RS14610 0.67 -2.6
2,960,784 + A4249_RS14610 0.67 +0.3
2,960,784 + A4249_RS14610 0.67 -0.3
2,961,241 - +0.0
2,961,246 + +0.3
2,961,246 + -0.5
2,961,246 + -0.3
2,961,246 + -0.4
2,961,247 - +0.0
2,961,247 - -1.1
2,961,247 - -1.3
2,961,247 - +0.2
2,961,279 + -1.4
2,961,279 + +0.3
2,961,279 + -0.4
2,961,280 - +0.8
2,961,331 - +0.5
2,962,277 + +0.2
2,962,277 + -0.8
2,962,278 - +0.8
2,962,297 + -0.5
2,962,298 - -1.0

Or see this region's nucleotide sequence