Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14030

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14020 and A4249_RS14025 are separated by 36 nucleotidesA4249_RS14025 and A4249_RS14030 are separated by 36 nucleotidesA4249_RS14030 and A4249_RS14035 are separated by 73 nucleotidesA4249_RS14035 and A4249_RS14040 are separated by 75 nucleotides A4249_RS14020: A4249_RS14020 - acyltransferase, at 2,829,157 to 2,830,311 _RS14020 A4249_RS14025: A4249_RS14025 - CHAP domain-containing protein, at 2,830,348 to 2,830,878 _RS14025 A4249_RS14030: A4249_RS14030 - tryptophan 2,3-dioxygenase, at 2,830,915 to 2,831,712 _RS14030 A4249_RS14035: A4249_RS14035 - PA2169 family four-helix-bundle protein, at 2,831,786 to 2,832,271 _RS14035 A4249_RS14040: A4249_RS14040 - 50S ribosomal protein L19, at 2,832,347 to 2,832,769 _RS14040 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -1 0 1 2at 2830.004 kb on - strand, within A4249_RS14020at 2830.004 kb on - strand, within A4249_RS14020at 2830.021 kb on + strand, within A4249_RS14020at 2830.021 kb on + strand, within A4249_RS14020at 2830.021 kb on + strand, within A4249_RS14020at 2830.022 kb on - strand, within A4249_RS14020at 2830.022 kb on - strand, within A4249_RS14020at 2830.030 kb on + strand, within A4249_RS14020at 2830.030 kb on + strand, within A4249_RS14020at 2830.030 kb on + strand, within A4249_RS14020at 2830.030 kb on + strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.031 kb on - strand, within A4249_RS14020at 2830.032 kb on + strand, within A4249_RS14020at 2830.032 kb on + strand, within A4249_RS14020at 2830.032 kb on + strand, within A4249_RS14020at 2830.032 kb on + strand, within A4249_RS14020at 2830.033 kb on - strand, within A4249_RS14020at 2830.033 kb on - strand, within A4249_RS14020at 2830.033 kb on - strand, within A4249_RS14020at 2830.033 kb on - strand, within A4249_RS14020at 2830.165 kb on + strand, within A4249_RS14020at 2830.165 kb on + strand, within A4249_RS14020at 2830.165 kb on + strand, within A4249_RS14020at 2830.166 kb on - strand, within A4249_RS14020at 2830.166 kb on - strand, within A4249_RS14020at 2830.166 kb on - strand, within A4249_RS14020at 2830.166 kb on - strand, within A4249_RS14020at 2830.192 kb on - strand, within A4249_RS14020at 2830.254 kb on + strandat 2830.254 kb on + strandat 2830.254 kb on + strandat 2830.255 kb on - strandat 2830.255 kb on - strandat 2830.255 kb on - strandat 2830.255 kb on - strandat 2830.255 kb on - strandat 2830.750 kb on + strand, within A4249_RS14025at 2830.784 kb on - strand, within A4249_RS14025at 2830.793 kb on - strand, within A4249_RS14025at 2830.805 kb on - strand, within A4249_RS14025at 2830.806 kb on + strand, within A4249_RS14025at 2830.876 kb on + strandat 2830.876 kb on + strandat 2830.876 kb on + strandat 2830.876 kb on + strandat 2830.907 kb on - strandat 2830.939 kb on + strandat 2830.939 kb on + strandat 2830.939 kb on + strandat 2830.939 kb on + strandat 2830.940 kb on - strandat 2830.940 kb on - strandat 2830.940 kb on - strandat 2830.948 kb on + strandat 2830.949 kb on - strandat 2830.949 kb on - strandat 2831.085 kb on + strand, within A4249_RS14030at 2831.085 kb on + strand, within A4249_RS14030at 2831.085 kb on + strand, within A4249_RS14030at 2831.085 kb on + strand, within A4249_RS14030at 2831.085 kb on + strand, within A4249_RS14030at 2831.085 kb on + strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.086 kb on - strand, within A4249_RS14030at 2831.116 kb on + strand, within A4249_RS14030at 2831.200 kb on + strand, within A4249_RS14030at 2831.200 kb on + strand, within A4249_RS14030at 2831.200 kb on + strand, within A4249_RS14030at 2831.201 kb on - strand, within A4249_RS14030at 2831.449 kb on + strand, within A4249_RS14030at 2831.449 kb on + strand, within A4249_RS14030at 2831.449 kb on + strand, within A4249_RS14030at 2831.450 kb on - strand, within A4249_RS14030at 2831.450 kb on - strand, within A4249_RS14030at 2831.450 kb on - strand, within A4249_RS14030at 2831.491 kb on + strand, within A4249_RS14030at 2831.491 kb on + strand, within A4249_RS14030at 2831.492 kb on - strand, within A4249_RS14030at 2831.522 kb on - strand, within A4249_RS14030at 2831.540 kb on + strand, within A4249_RS14030at 2831.541 kb on - strand, within A4249_RS14030at 2831.541 kb on - strand, within A4249_RS14030at 2831.648 kb on - strandat 2831.648 kb on - strandat 2831.783 kb on + strandat 2831.783 kb on + strandat 2831.783 kb on + strandat 2831.783 kb on + strandat 2831.783 kb on + strandat 2831.784 kb on - strandat 2831.784 kb on - strandat 2831.784 kb on - strandat 2831.784 kb on - strandat 2831.784 kb on - strandat 2831.897 kb on + strand, within A4249_RS14035at 2831.898 kb on - strand, within A4249_RS14035at 2832.113 kb on + strand, within A4249_RS14035at 2832.113 kb on + strand, within A4249_RS14035at 2832.113 kb on + strand, within A4249_RS14035at 2832.113 kb on + strand, within A4249_RS14035at 2832.114 kb on - strand, within A4249_RS14035at 2832.114 kb on - strand, within A4249_RS14035at 2832.133 kb on + strand, within A4249_RS14035at 2832.134 kb on - strand, within A4249_RS14035at 2832.176 kb on + strand, within A4249_RS14035at 2832.176 kb on + strand, within A4249_RS14035at 2832.176 kb on + strand, within A4249_RS14035at 2832.177 kb on - strand, within A4249_RS14035at 2832.177 kb on - strand, within A4249_RS14035at 2832.177 kb on - strand, within A4249_RS14035at 2832.269 kb on + strandat 2832.269 kb on + strandat 2832.269 kb on + strandat 2832.269 kb on + strandat 2832.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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2,830,004 - A4249_RS14020 0.73 +0.9
2,830,004 - A4249_RS14020 0.73 +0.5
2,830,021 + A4249_RS14020 0.75 +0.3
2,830,021 + A4249_RS14020 0.75 +0.1
2,830,021 + A4249_RS14020 0.75 +0.2
2,830,022 - A4249_RS14020 0.75 +0.2
2,830,022 - A4249_RS14020 0.75 -0.2
2,830,030 + A4249_RS14020 0.76 -1.3
2,830,030 + A4249_RS14020 0.76 +0.7
2,830,030 + A4249_RS14020 0.76 +1.2
2,830,030 + A4249_RS14020 0.76 +0.1
2,830,031 - A4249_RS14020 0.76 +0.1
2,830,031 - A4249_RS14020 0.76 +0.1
2,830,031 - A4249_RS14020 0.76 +0.1
2,830,031 - A4249_RS14020 0.76 +0.3
2,830,031 - A4249_RS14020 0.76 -0.1
2,830,031 - A4249_RS14020 0.76 -0.1
2,830,031 - A4249_RS14020 0.76 +0.6
2,830,031 - A4249_RS14020 0.76 -0.0
2,830,032 + A4249_RS14020 0.76 +0.1
2,830,032 + A4249_RS14020 0.76 -0.3
2,830,032 + A4249_RS14020 0.76 +0.5
2,830,032 + A4249_RS14020 0.76 +0.3
2,830,033 - A4249_RS14020 0.76 +0.2
2,830,033 - A4249_RS14020 0.76 +0.7
2,830,033 - A4249_RS14020 0.76 -1.7
2,830,033 - A4249_RS14020 0.76 -0.3
2,830,165 + A4249_RS14020 0.87 +0.9
2,830,165 + A4249_RS14020 0.87 +1.0
2,830,165 + A4249_RS14020 0.87 +1.1
2,830,166 - A4249_RS14020 0.87 +1.6
2,830,166 - A4249_RS14020 0.87 -0.1
2,830,166 - A4249_RS14020 0.87 +0.2
2,830,166 - A4249_RS14020 0.87 -0.6
2,830,192 - A4249_RS14020 0.90 +0.4
2,830,254 + +0.3
2,830,254 + +0.4
2,830,254 + -0.3
2,830,255 - -0.7
2,830,255 - +0.4
2,830,255 - +0.4
2,830,255 - +0.3
2,830,255 - +0.3
2,830,750 + A4249_RS14025 0.76 +0.4
2,830,784 - A4249_RS14025 0.82 +0.9
2,830,793 - A4249_RS14025 0.84 +0.7
2,830,805 - A4249_RS14025 0.86 +0.3
2,830,806 + A4249_RS14025 0.86 -0.2
2,830,876 + +0.2
2,830,876 + +0.0
2,830,876 + +0.9
2,830,876 + +0.2
2,830,907 - -0.2
2,830,939 + +0.2
2,830,939 + +0.3
2,830,939 + -0.1
2,830,939 + +0.2
2,830,940 - -1.1
2,830,940 - -0.1
2,830,940 - -0.1
2,830,948 + -0.6
2,830,949 - -0.9
2,830,949 - -0.5
2,831,085 + A4249_RS14030 0.21 -0.2
2,831,085 + A4249_RS14030 0.21 -0.7
2,831,085 + A4249_RS14030 0.21 +0.6
2,831,085 + A4249_RS14030 0.21 +0.8
2,831,085 + A4249_RS14030 0.21 +0.1
2,831,085 + A4249_RS14030 0.21 -0.2
2,831,086 - A4249_RS14030 0.21 +0.4
2,831,086 - A4249_RS14030 0.21 -0.4
2,831,086 - A4249_RS14030 0.21 +1.0
2,831,086 - A4249_RS14030 0.21 +0.3
2,831,086 - A4249_RS14030 0.21 -0.3
2,831,086 - A4249_RS14030 0.21 +0.0
2,831,116 + A4249_RS14030 0.25 +0.2
2,831,200 + A4249_RS14030 0.36 -0.2
2,831,200 + A4249_RS14030 0.36 +0.6
2,831,200 + A4249_RS14030 0.36 +0.4
2,831,201 - A4249_RS14030 0.36 +0.7
2,831,449 + A4249_RS14030 0.67 -0.0
2,831,449 + A4249_RS14030 0.67 +0.9
2,831,449 + A4249_RS14030 0.67 +2.3
2,831,450 - A4249_RS14030 0.67 +0.6
2,831,450 - A4249_RS14030 0.67 +0.9
2,831,450 - A4249_RS14030 0.67 -0.4
2,831,491 + A4249_RS14030 0.72 -0.1
2,831,491 + A4249_RS14030 0.72 +0.6
2,831,492 - A4249_RS14030 0.72 +0.8
2,831,522 - A4249_RS14030 0.76 +0.7
2,831,540 + A4249_RS14030 0.78 +0.6
2,831,541 - A4249_RS14030 0.78 -0.1
2,831,541 - A4249_RS14030 0.78 +0.3
2,831,648 - +0.8
2,831,648 - +0.2
2,831,783 + -0.2
2,831,783 + -0.1
2,831,783 + +0.7
2,831,783 + -0.8
2,831,783 + +0.7
2,831,784 - -0.6
2,831,784 - +0.0
2,831,784 - -0.2
2,831,784 - +0.6
2,831,784 - -0.3
2,831,897 + A4249_RS14035 0.23 -0.9
2,831,898 - A4249_RS14035 0.23 +0.9
2,832,113 + A4249_RS14035 0.67 -0.3
2,832,113 + A4249_RS14035 0.67 +0.4
2,832,113 + A4249_RS14035 0.67 +0.7
2,832,113 + A4249_RS14035 0.67 -0.1
2,832,114 - A4249_RS14035 0.67 +1.4
2,832,114 - A4249_RS14035 0.67 +1.6
2,832,133 + A4249_RS14035 0.71 +0.6
2,832,134 - A4249_RS14035 0.72 -0.1
2,832,176 + A4249_RS14035 0.80 -0.3
2,832,176 + A4249_RS14035 0.80 -0.1
2,832,176 + A4249_RS14035 0.80 +0.8
2,832,177 - A4249_RS14035 0.80 +1.1
2,832,177 - A4249_RS14035 0.80 -0.1
2,832,177 - A4249_RS14035 0.80 +0.0
2,832,269 + -0.1
2,832,269 + +0.7
2,832,269 + -0.1
2,832,269 + -0.0
2,832,270 - -0.1

Or see this region's nucleotide sequence