Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13170

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13165 and A4249_RS13170 are separated by 47 nucleotidesA4249_RS13170 and A4249_RS13175 are separated by 168 nucleotidesA4249_RS13175 and A4249_RS13180 are separated by 7 nucleotides A4249_RS13165: A4249_RS13165 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 2,650,543 to 2,651,880 _RS13165 A4249_RS13170: A4249_RS13170 - potassium transporter Kup, at 2,651,928 to 2,653,904 _RS13170 A4249_RS13175: A4249_RS13175 - Rrf2 family transcriptional regulator, at 2,654,073 to 2,654,543 _RS13175 A4249_RS13180: A4249_RS13180 - SDR family oxidoreductase, at 2,654,551 to 2,655,348 _RS13180 Position (kb) 2651 2652 2653 2654Strain fitness (log2 ratio) -2 -1 0 1at 2651.372 kb on + strand, within A4249_RS13165at 2651.372 kb on + strand, within A4249_RS13165at 2651.372 kb on + strand, within A4249_RS13165at 2651.373 kb on - strand, within A4249_RS13165at 2651.373 kb on - strand, within A4249_RS13165at 2651.373 kb on - strand, within A4249_RS13165at 2651.483 kb on + strand, within A4249_RS13165at 2651.483 kb on + strand, within A4249_RS13165at 2651.484 kb on - strand, within A4249_RS13165at 2651.484 kb on - strand, within A4249_RS13165at 2651.484 kb on - strand, within A4249_RS13165at 2651.932 kb on - strandat 2653.908 kb on + strandat 2653.908 kb on + strandat 2653.909 kb on - strandat 2653.959 kb on + strandat 2653.960 kb on - strandat 2654.050 kb on - strandat 2654.050 kb on - strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.118 kb on + strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.119 kb on - strandat 2654.120 kb on + strand, within A4249_RS13175at 2654.121 kb on - strand, within A4249_RS13175at 2654.121 kb on - strand, within A4249_RS13175at 2654.393 kb on + strand, within A4249_RS13175at 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.610 kb on + strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.611 kb on - strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.614 kb on + strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strandat 2654.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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2,651,372 + A4249_RS13165 0.62 +0.4
2,651,372 + A4249_RS13165 0.62 +0.2
2,651,372 + A4249_RS13165 0.62 +1.1
2,651,373 - A4249_RS13165 0.62 +0.6
2,651,373 - A4249_RS13165 0.62 -1.4
2,651,373 - A4249_RS13165 0.62 -0.5
2,651,483 + A4249_RS13165 0.70 +1.1
2,651,483 + A4249_RS13165 0.70 +0.5
2,651,484 - A4249_RS13165 0.70 +0.9
2,651,484 - A4249_RS13165 0.70 -0.2
2,651,484 - A4249_RS13165 0.70 -1.1
2,651,932 - -0.4
2,653,908 + -0.2
2,653,908 + -0.0
2,653,909 - +0.3
2,653,959 + +0.0
2,653,960 - -1.9
2,654,050 - -0.2
2,654,050 - +0.1
2,654,118 + +1.5
2,654,118 + -0.2
2,654,118 + -0.5
2,654,118 + -0.7
2,654,118 + -0.9
2,654,118 + -0.9
2,654,118 + -1.2
2,654,118 + -0.8
2,654,119 - -0.0
2,654,119 - +0.3
2,654,119 - +1.3
2,654,119 - -0.3
2,654,119 - -0.1
2,654,119 - +0.3
2,654,119 - -1.1
2,654,119 - -0.7
2,654,119 - -0.5
2,654,119 - -1.4
2,654,119 - +0.5
2,654,119 - +0.3
2,654,119 - -0.6
2,654,120 + A4249_RS13175 0.10 -0.6
2,654,121 - A4249_RS13175 0.10 +0.2
2,654,121 - A4249_RS13175 0.10 -0.7
2,654,393 + A4249_RS13175 0.68 -1.4
2,654,610 + +1.0
2,654,610 + -0.2
2,654,610 + -0.2
2,654,610 + -0.8
2,654,611 - +0.9
2,654,611 - +0.1
2,654,611 - -0.1
2,654,611 - -0.2
2,654,611 - -0.4
2,654,611 - +0.1
2,654,611 - -1.5
2,654,611 - -0.4
2,654,611 - +0.2
2,654,614 + -0.0
2,654,614 + -0.0
2,654,614 + +0.8
2,654,614 + +0.1
2,654,614 + -1.5
2,654,615 - -0.2
2,654,615 - -0.4
2,654,615 - +0.4
2,654,615 - +0.0
2,654,615 - -0.5
2,654,615 - +0.7
2,654,615 - +0.2

Or see this region's nucleotide sequence