Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11125

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11115 and A4249_RS11120 are separated by 84 nucleotidesA4249_RS11120 and A4249_RS11125 are separated by 125 nucleotidesA4249_RS11125 and A4249_RS11130 are separated by 71 nucleotidesA4249_RS11130 and A4249_RS11135 are separated by 1 nucleotides A4249_RS11115: A4249_RS11115 - MFS transporter, at 2,236,832 to 2,238,136 _RS11115 A4249_RS11120: A4249_RS11120 - translation initiation factor IF-3, at 2,238,221 to 2,238,742 _RS11120 A4249_RS11125: A4249_RS11125 - glycosyltransferase family 9 protein, at 2,238,868 to 2,239,830 _RS11125 A4249_RS11130: A4249_RS11130 - alpha/beta hydrolase, at 2,239,902 to 2,240,642 _RS11130 A4249_RS11135: A4249_RS11135 - N-carbamoylputrescine amidase, at 2,240,644 to 2,241,507 _RS11135 Position (kb) 2238 2239 2240Strain fitness (log2 ratio) -2 -1 0 1at 2238.088 kb on + strandat 2238.088 kb on + strandat 2238.088 kb on + strandat 2238.088 kb on + strandat 2238.089 kb on - strandat 2238.089 kb on - strandat 2238.089 kb on - strandat 2238.089 kb on - strandat 2238.089 kb on - strandat 2238.089 kb on - strandat 2238.201 kb on + strandat 2238.201 kb on + strandat 2238.201 kb on + strandat 2238.202 kb on - strandat 2238.789 kb on - strandat 2238.789 kb on - strandat 2238.789 kb on - strandat 2238.789 kb on - strandat 2238.846 kb on - strandat 2238.846 kb on - strandat 2238.896 kb on + strandat 2238.896 kb on + strandat 2238.896 kb on + strandat 2238.897 kb on - strandat 2238.897 kb on - strandat 2238.897 kb on - strandat 2238.897 kb on - strandat 2238.897 kb on - strandat 2238.897 kb on - strandat 2238.943 kb on + strandat 2238.944 kb on - strandat 2238.944 kb on - strandat 2238.944 kb on - strandat 2238.993 kb on + strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2239.020 kb on - strand, within A4249_RS11125at 2239.020 kb on - strand, within A4249_RS11125at 2239.520 kb on + strand, within A4249_RS11125at 2239.521 kb on - strand, within A4249_RS11125at 2239.521 kb on - strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2240.077 kb on - strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.640 kb on + strandat 2240.640 kb on + strandat 2240.641 kb on - strandat 2240.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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2,238,088 + +0.5
2,238,088 + -0.6
2,238,088 + -0.6
2,238,088 + +0.1
2,238,089 - -0.5
2,238,089 - +1.1
2,238,089 - +1.1
2,238,089 - +0.1
2,238,089 - -0.1
2,238,089 - +0.3
2,238,201 + -0.7
2,238,201 + -0.7
2,238,201 + -1.2
2,238,202 - -0.7
2,238,789 - +0.4
2,238,789 - -0.3
2,238,789 - +0.0
2,238,789 - -0.2
2,238,846 - +0.2
2,238,846 - -0.3
2,238,896 + +0.3
2,238,896 + -0.7
2,238,896 + -0.2
2,238,897 - +0.1
2,238,897 - -0.2
2,238,897 - -0.0
2,238,897 - -0.1
2,238,897 - -0.2
2,238,897 - +0.5
2,238,943 + -0.5
2,238,944 - -1.0
2,238,944 - -0.7
2,238,944 - -1.2
2,238,993 + A4249_RS11125 0.13 -1.0
2,238,994 - A4249_RS11125 0.13 -2.2
2,238,994 - A4249_RS11125 0.13 -0.8
2,238,994 - A4249_RS11125 0.13 -1.0
2,239,020 - A4249_RS11125 0.16 -0.8
2,239,020 - A4249_RS11125 0.16 -1.1
2,239,520 + A4249_RS11125 0.68 -1.3
2,239,521 - A4249_RS11125 0.68 -1.3
2,239,521 - A4249_RS11125 0.68 -1.3
2,239,550 + A4249_RS11125 0.71 -1.1
2,239,550 + A4249_RS11125 0.71 -1.0
2,239,550 + A4249_RS11125 0.71 -0.8
2,239,551 - A4249_RS11125 0.71 -1.0
2,239,551 - A4249_RS11125 0.71 -1.0
2,239,551 - A4249_RS11125 0.71 -0.6
2,240,077 - A4249_RS11130 0.24 -1.3
2,240,385 + A4249_RS11130 0.65 -0.3
2,240,385 + A4249_RS11130 0.65 -0.0
2,240,385 + A4249_RS11130 0.65 -1.3
2,240,385 + A4249_RS11130 0.65 +0.1
2,240,385 + A4249_RS11130 0.65 +0.1
2,240,385 + A4249_RS11130 0.65 +0.0
2,240,385 + A4249_RS11130 0.65 +0.4
2,240,385 + A4249_RS11130 0.65 +0.1
2,240,385 + A4249_RS11130 0.65 -0.6
2,240,385 + A4249_RS11130 0.65 +0.2
2,240,385 + A4249_RS11130 0.65 -0.4
2,240,385 + A4249_RS11130 0.65 +0.5
2,240,386 - A4249_RS11130 0.65 -0.1
2,240,386 - A4249_RS11130 0.65 +0.3
2,240,386 - A4249_RS11130 0.65 +0.1
2,240,386 - A4249_RS11130 0.65 -0.2
2,240,386 - A4249_RS11130 0.65 -0.5
2,240,386 - A4249_RS11130 0.65 -0.1
2,240,386 - A4249_RS11130 0.65 +0.5
2,240,386 - A4249_RS11130 0.65 -0.2
2,240,386 - A4249_RS11130 0.65 -0.6
2,240,640 + +0.0
2,240,640 + +1.6
2,240,641 - -0.4
2,240,641 - -0.5

Or see this region's nucleotide sequence