Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10370

Experiment: Uracil 0.8921 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS10360 and A4249_RS10365 are separated by 79 nucleotidesA4249_RS10365 and A4249_RS10370 overlap by 4 nucleotidesA4249_RS10370 and A4249_RS10375 are separated by 55 nucleotidesA4249_RS10375 and A4249_RS10380 are separated by 84 nucleotides A4249_RS10360: A4249_RS10360 - HAMP domain-containing sensor histidine kinase, at 2,078,080 to 2,079,789 _RS10360 A4249_RS10365: A4249_RS10365 - hypothetical protein, at 2,079,869 to 2,080,132 _RS10365 A4249_RS10370: A4249_RS10370 - hypothetical protein, at 2,080,129 to 2,080,989 _RS10370 A4249_RS10375: A4249_RS10375 - DUF1491 family protein, at 2,081,045 to 2,081,374 _RS10375 A4249_RS10380: A4249_RS10380 - DUF3883 domain-containing protein, at 2,081,459 to 2,082,403 _RS10380 Position (kb) 2080 2081Strain fitness (log2 ratio) -2 -1 0 1 2at 2079.167 kb on - strand, within A4249_RS10360at 2079.794 kb on + strandat 2079.794 kb on + strandat 2079.795 kb on - strandat 2079.795 kb on - strandat 2079.795 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.868 kb on + strandat 2079.869 kb on - strandat 2080.050 kb on + strand, within A4249_RS10365at 2080.051 kb on - strand, within A4249_RS10365at 2080.051 kb on - strand, within A4249_RS10365at 2080.130 kb on + strandat 2080.130 kb on + strandat 2080.130 kb on + strandat 2080.131 kb on - strandat 2080.131 kb on - strandat 2080.330 kb on - strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.584 kb on - strand, within A4249_RS10370at 2080.802 kb on + strand, within A4249_RS10370at 2080.803 kb on - strand, within A4249_RS10370at 2080.886 kb on + strand, within A4249_RS10370at 2080.887 kb on - strand, within A4249_RS10370at 2080.982 kb on - strandat 2080.982 kb on - strandat 2081.108 kb on + strand, within A4249_RS10375at 2081.108 kb on + strand, within A4249_RS10375at 2081.108 kb on + strand, within A4249_RS10375at 2081.109 kb on - strand, within A4249_RS10375at 2081.165 kb on + strand, within A4249_RS10375at 2081.166 kb on - strand, within A4249_RS10375at 2081.166 kb on - strand, within A4249_RS10375at 2081.166 kb on - strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.276 kb on + strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.277 kb on - strand, within A4249_RS10375at 2081.297 kb on + strand, within A4249_RS10375at 2081.297 kb on + strand, within A4249_RS10375at 2081.372 kb on + strandat 2081.372 kb on + strandat 2081.372 kb on + strandat 2081.372 kb on + strandat 2081.372 kb on + strandat 2081.372 kb on + strandat 2081.373 kb on - strandat 2081.373 kb on - strandat 2081.373 kb on - strandat 2081.373 kb on - strandat 2081.373 kb on - strandat 2081.373 kb on - strandat 2081.413 kb on + strandat 2081.413 kb on + strandat 2081.413 kb on + strandat 2081.414 kb on - strandat 2081.414 kb on - strandat 2081.414 kb on - strandat 2081.435 kb on + strandat 2081.435 kb on + strandat 2081.436 kb on - strandat 2081.525 kb on + strandat 2081.526 kb on - strandat 2081.526 kb on - strandat 2081.708 kb on + strand, within A4249_RS10380at 2081.708 kb on + strand, within A4249_RS10380at 2081.709 kb on - strand, within A4249_RS10380at 2081.745 kb on + strand, within A4249_RS10380at 2081.745 kb on + strand, within A4249_RS10380at 2081.746 kb on - strand, within A4249_RS10380at 2081.766 kb on + strand, within A4249_RS10380at 2081.766 kb on + strand, within A4249_RS10380at 2081.767 kb on - strand, within A4249_RS10380at 2081.767 kb on - strand, within A4249_RS10380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
remove
2,079,167 - A4249_RS10360 0.64 -1.5
2,079,794 + +0.1
2,079,794 + +1.3
2,079,795 - -0.4
2,079,795 - -0.2
2,079,795 - +1.0
2,079,828 - +0.2
2,079,828 - -1.5
2,079,828 - +0.5
2,079,828 - +0.5
2,079,835 + -1.5
2,079,835 + -1.1
2,079,835 + +0.7
2,079,835 + -0.0
2,079,835 + -2.4
2,079,835 + +0.2
2,079,836 - +0.2
2,079,836 - -0.4
2,079,836 - -0.9
2,079,836 - -0.4
2,079,836 - +0.4
2,079,836 - -0.0
2,079,868 + -0.6
2,079,869 - -1.5
2,080,050 + A4249_RS10365 0.69 +0.5
2,080,051 - A4249_RS10365 0.69 -0.7
2,080,051 - A4249_RS10365 0.69 -0.2
2,080,130 + -0.4
2,080,130 + -0.1
2,080,130 + +0.1
2,080,131 - +0.2
2,080,131 - +0.4
2,080,330 - A4249_RS10370 0.23 -0.5
2,080,583 + A4249_RS10370 0.53 +0.1
2,080,583 + A4249_RS10370 0.53 +0.1
2,080,583 + A4249_RS10370 0.53 -0.5
2,080,583 + A4249_RS10370 0.53 +0.3
2,080,584 - A4249_RS10370 0.53 +0.3
2,080,802 + A4249_RS10370 0.78 +0.3
2,080,803 - A4249_RS10370 0.78 +0.1
2,080,886 + A4249_RS10370 0.88 +0.2
2,080,887 - A4249_RS10370 0.88 -0.5
2,080,982 - +0.1
2,080,982 - -0.6
2,081,108 + A4249_RS10375 0.19 -0.8
2,081,108 + A4249_RS10375 0.19 +0.4
2,081,108 + A4249_RS10375 0.19 +0.4
2,081,109 - A4249_RS10375 0.19 +1.7
2,081,165 + A4249_RS10375 0.36 +0.2
2,081,166 - A4249_RS10375 0.37 +0.7
2,081,166 - A4249_RS10375 0.37 +1.4
2,081,166 - A4249_RS10375 0.37 -0.1
2,081,276 + A4249_RS10375 0.70 -0.7
2,081,276 + A4249_RS10375 0.70 +1.0
2,081,276 + A4249_RS10375 0.70 +1.1
2,081,276 + A4249_RS10375 0.70 -0.8
2,081,276 + A4249_RS10375 0.70 -0.0
2,081,276 + A4249_RS10375 0.70 +1.4
2,081,276 + A4249_RS10375 0.70 -0.3
2,081,277 - A4249_RS10375 0.70 -0.1
2,081,277 - A4249_RS10375 0.70 +0.5
2,081,277 - A4249_RS10375 0.70 +0.1
2,081,277 - A4249_RS10375 0.70 -0.9
2,081,277 - A4249_RS10375 0.70 -0.3
2,081,277 - A4249_RS10375 0.70 -1.3
2,081,277 - A4249_RS10375 0.70 -1.5
2,081,277 - A4249_RS10375 0.70 -0.1
2,081,277 - A4249_RS10375 0.70 +1.1
2,081,277 - A4249_RS10375 0.70 +2.2
2,081,297 + A4249_RS10375 0.76 +1.1
2,081,297 + A4249_RS10375 0.76 +0.3
2,081,372 + +0.9
2,081,372 + -1.9
2,081,372 + +0.3
2,081,372 + -0.3
2,081,372 + -0.1
2,081,372 + +0.1
2,081,373 - -0.2
2,081,373 - -0.5
2,081,373 - -0.9
2,081,373 - +0.1
2,081,373 - -0.1
2,081,373 - +0.6
2,081,413 + -0.4
2,081,413 + -0.1
2,081,413 + +0.2
2,081,414 - -0.5
2,081,414 - -0.2
2,081,414 - -0.9
2,081,435 + +0.7
2,081,435 + -0.4
2,081,436 - +1.4
2,081,525 + -0.7
2,081,526 - +0.0
2,081,526 - -1.0
2,081,708 + A4249_RS10380 0.26 -0.3
2,081,708 + A4249_RS10380 0.26 +0.2
2,081,709 - A4249_RS10380 0.26 +0.3
2,081,745 + A4249_RS10380 0.30 +0.5
2,081,745 + A4249_RS10380 0.30 -0.5
2,081,746 - A4249_RS10380 0.30 -0.3
2,081,766 + A4249_RS10380 0.32 +0.3
2,081,766 + A4249_RS10380 0.32 +0.8
2,081,767 - A4249_RS10380 0.33 +0.9
2,081,767 - A4249_RS10380 0.33 -0.3

Or see this region's nucleotide sequence