Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08805

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08795 and A4249_RS08800 are separated by 3 nucleotidesA4249_RS08800 and A4249_RS08805 are separated by 43 nucleotidesA4249_RS08805 and A4249_RS08810 are separated by 62 nucleotidesA4249_RS08810 and A4249_RS08815 are separated by 131 nucleotides A4249_RS08795: A4249_RS08795 - glyoxalase, at 1,763,670 to 1,764,011 _RS08795 A4249_RS08800: A4249_RS08800 - hypothetical protein, at 1,764,015 to 1,764,797 _RS08800 A4249_RS08805: A4249_RS08805 - HAMP domain-containing sensor histidine kinase, at 1,764,841 to 1,766,532 _RS08805 A4249_RS08810: A4249_RS08810 - thiamine phosphate synthase, at 1,766,595 to 1,767,248 _RS08810 A4249_RS08815: A4249_RS08815 - (2Fe-2S)-binding protein, at 1,767,380 to 1,767,565 _RS08815 Position (kb) 1764 1765 1766 1767Strain fitness (log2 ratio) -2 -1 0 1at 1763.865 kb on + strand, within A4249_RS08795at 1763.865 kb on + strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.866 kb on - strand, within A4249_RS08795at 1763.934 kb on + strand, within A4249_RS08795at 1763.934 kb on + strand, within A4249_RS08795at 1763.935 kb on - strand, within A4249_RS08795at 1763.935 kb on - strand, within A4249_RS08795at 1764.016 kb on + strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.017 kb on - strandat 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.205 kb on + strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.206 kb on - strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.235 kb on + strand, within A4249_RS08800at 1764.236 kb on - strand, within A4249_RS08800at 1764.274 kb on + strand, within A4249_RS08800at 1764.274 kb on + strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1764.275 kb on - strand, within A4249_RS08800at 1765.118 kb on + strand, within A4249_RS08805at 1765.118 kb on + strand, within A4249_RS08805at 1765.119 kb on - strand, within A4249_RS08805at 1765.119 kb on - strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.614 kb on + strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.615 kb on - strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.616 kb on + strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.617 kb on - strand, within A4249_RS08805at 1765.676 kb on + strand, within A4249_RS08805at 1765.832 kb on + strand, within A4249_RS08805at 1765.832 kb on + strand, within A4249_RS08805at 1765.832 kb on + strand, within A4249_RS08805at 1765.832 kb on + strand, within A4249_RS08805at 1765.832 kb on + strand, within A4249_RS08805at 1765.833 kb on - strand, within A4249_RS08805at 1765.833 kb on - strand, within A4249_RS08805at 1765.939 kb on + strand, within A4249_RS08805at 1765.940 kb on - strand, within A4249_RS08805at 1766.354 kb on + strand, within A4249_RS08805at 1766.563 kb on + strandat 1766.563 kb on + strandat 1766.563 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.580 kb on + strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.581 kb on - strandat 1766.584 kb on - strandat 1766.584 kb on - strandat 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.289 kb on + strandat 1767.290 kb on - strandat 1767.339 kb on + strandat 1767.340 kb on - strandat 1767.340 kb on - strandat 1767.341 kb on + strandat 1767.342 kb on - strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.383 kb on + strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.384 kb on - strandat 1767.397 kb on + strandat 1767.397 kb on + strandat 1767.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,763,865 + A4249_RS08795 0.57 +0.4
1,763,865 + A4249_RS08795 0.57 +0.5
1,763,866 - A4249_RS08795 0.57 -0.9
1,763,866 - A4249_RS08795 0.57 +0.0
1,763,866 - A4249_RS08795 0.57 -0.9
1,763,866 - A4249_RS08795 0.57 -0.4
1,763,934 + A4249_RS08795 0.77 +0.6
1,763,934 + A4249_RS08795 0.77 -0.0
1,763,935 - A4249_RS08795 0.77 -1.9
1,763,935 - A4249_RS08795 0.77 +0.4
1,764,016 + +0.6
1,764,017 - +0.5
1,764,017 - +1.0
1,764,017 - -0.3
1,764,017 - -1.7
1,764,205 + A4249_RS08800 0.24 +0.0
1,764,205 + A4249_RS08800 0.24 -1.0
1,764,205 + A4249_RS08800 0.24 +0.1
1,764,205 + A4249_RS08800 0.24 -0.7
1,764,206 - A4249_RS08800 0.24 +0.7
1,764,206 - A4249_RS08800 0.24 -0.6
1,764,206 - A4249_RS08800 0.24 +0.0
1,764,206 - A4249_RS08800 0.24 +0.1
1,764,206 - A4249_RS08800 0.24 -0.1
1,764,206 - A4249_RS08800 0.24 -0.3
1,764,206 - A4249_RS08800 0.24 +0.1
1,764,235 + A4249_RS08800 0.28 -0.4
1,764,235 + A4249_RS08800 0.28 -0.7
1,764,235 + A4249_RS08800 0.28 -0.3
1,764,236 - A4249_RS08800 0.28 -0.1
1,764,274 + A4249_RS08800 0.33 -0.6
1,764,274 + A4249_RS08800 0.33 -1.2
1,764,275 - A4249_RS08800 0.33 +0.5
1,764,275 - A4249_RS08800 0.33 -0.3
1,764,275 - A4249_RS08800 0.33 -0.1
1,764,275 - A4249_RS08800 0.33 +0.3
1,764,275 - A4249_RS08800 0.33 -0.3
1,764,275 - A4249_RS08800 0.33 +0.2
1,765,118 + A4249_RS08805 0.16 -2.7
1,765,118 + A4249_RS08805 0.16 -0.5
1,765,119 - A4249_RS08805 0.16 +0.2
1,765,119 - A4249_RS08805 0.16 +1.7
1,765,614 + A4249_RS08805 0.46 -0.1
1,765,614 + A4249_RS08805 0.46 -0.6
1,765,614 + A4249_RS08805 0.46 -0.2
1,765,614 + A4249_RS08805 0.46 -0.0
1,765,614 + A4249_RS08805 0.46 -0.8
1,765,614 + A4249_RS08805 0.46 -0.2
1,765,614 + A4249_RS08805 0.46 +0.3
1,765,614 + A4249_RS08805 0.46 -0.3
1,765,614 + A4249_RS08805 0.46 -0.1
1,765,615 - A4249_RS08805 0.46 +0.5
1,765,615 - A4249_RS08805 0.46 -1.0
1,765,615 - A4249_RS08805 0.46 -1.7
1,765,615 - A4249_RS08805 0.46 -0.3
1,765,615 - A4249_RS08805 0.46 -0.5
1,765,615 - A4249_RS08805 0.46 +0.3
1,765,615 - A4249_RS08805 0.46 -0.5
1,765,615 - A4249_RS08805 0.46 -0.5
1,765,615 - A4249_RS08805 0.46 -1.2
1,765,615 - A4249_RS08805 0.46 +0.6
1,765,615 - A4249_RS08805 0.46 -0.3
1,765,615 - A4249_RS08805 0.46 -0.2
1,765,616 + A4249_RS08805 0.46 +0.2
1,765,616 + A4249_RS08805 0.46 -0.7
1,765,616 + A4249_RS08805 0.46 -0.6
1,765,616 + A4249_RS08805 0.46 -0.6
1,765,617 - A4249_RS08805 0.46 -0.3
1,765,617 - A4249_RS08805 0.46 -1.1
1,765,617 - A4249_RS08805 0.46 +0.3
1,765,617 - A4249_RS08805 0.46 -0.7
1,765,617 - A4249_RS08805 0.46 -0.5
1,765,617 - A4249_RS08805 0.46 +0.9
1,765,617 - A4249_RS08805 0.46 -0.1
1,765,617 - A4249_RS08805 0.46 -0.8
1,765,617 - A4249_RS08805 0.46 -0.5
1,765,617 - A4249_RS08805 0.46 +0.8
1,765,676 + A4249_RS08805 0.49 -1.9
1,765,832 + A4249_RS08805 0.59 -2.3
1,765,832 + A4249_RS08805 0.59 -0.6
1,765,832 + A4249_RS08805 0.59 -1.2
1,765,832 + A4249_RS08805 0.59 -1.1
1,765,832 + A4249_RS08805 0.59 -0.2
1,765,833 - A4249_RS08805 0.59 -1.1
1,765,833 - A4249_RS08805 0.59 +0.4
1,765,939 + A4249_RS08805 0.65 +0.4
1,765,940 - A4249_RS08805 0.65 +0.0
1,766,354 + A4249_RS08805 0.89 +0.1
1,766,563 + -1.3
1,766,563 + -0.4
1,766,563 + +0.2
1,766,580 + -0.4
1,766,580 + -0.2
1,766,580 + -0.2
1,766,580 + -1.1
1,766,580 + -0.7
1,766,580 + -0.9
1,766,581 - -1.2
1,766,581 - +0.3
1,766,581 - +0.9
1,766,581 - -0.5
1,766,581 - +0.4
1,766,581 - -0.2
1,766,581 - +0.4
1,766,581 - -1.1
1,766,584 - -1.2
1,766,584 - -0.8
1,767,289 + -0.1
1,767,289 + -0.3
1,767,289 + +0.7
1,767,290 - -0.3
1,767,339 + -0.2
1,767,340 - -1.2
1,767,340 - +0.3
1,767,341 + +0.1
1,767,342 - +0.4
1,767,383 + -0.1
1,767,383 + -0.9
1,767,383 + +0.1
1,767,384 - -0.6
1,767,384 - -1.3
1,767,384 - +0.5
1,767,384 - -0.0
1,767,384 - +0.3
1,767,397 + +0.2
1,767,397 + +1.5
1,767,398 - +0.3

Or see this region's nucleotide sequence