Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07085

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07080 and A4249_RS07085 overlap by 4 nucleotidesA4249_RS07085 and A4249_RS07090 are separated by 511 nucleotides A4249_RS07080: A4249_RS07080 - hypothetical protein, at 1,421,621 to 1,422,301 _RS07080 A4249_RS07085: A4249_RS07085 - hypothetical protein, at 1,422,298 to 1,422,861 _RS07085 A4249_RS07090: A4249_RS07090 - hypothetical protein, at 1,423,373 to 1,423,822 _RS07090 Position (kb) 1422 1423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.333 kb on + strandat 1421.405 kb on - strandat 1421.679 kb on + strandat 1421.679 kb on + strandat 1421.680 kb on - strandat 1421.680 kb on - strandat 1421.841 kb on + strand, within A4249_RS07080at 1421.888 kb on + strand, within A4249_RS07080at 1421.888 kb on + strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.946 kb on - strand, within A4249_RS07080at 1422.425 kb on + strand, within A4249_RS07085at 1422.425 kb on + strand, within A4249_RS07085at 1422.425 kb on + strand, within A4249_RS07085at 1422.425 kb on + strand, within A4249_RS07085at 1422.426 kb on - strand, within A4249_RS07085at 1422.426 kb on - strand, within A4249_RS07085at 1422.426 kb on - strand, within A4249_RS07085at 1422.426 kb on - strand, within A4249_RS07085at 1422.449 kb on + strand, within A4249_RS07085at 1422.449 kb on + strand, within A4249_RS07085at 1422.449 kb on + strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.450 kb on - strand, within A4249_RS07085at 1422.494 kb on + strand, within A4249_RS07085at 1422.495 kb on - strand, within A4249_RS07085at 1422.495 kb on - strand, within A4249_RS07085at 1422.495 kb on - strand, within A4249_RS07085at 1422.495 kb on - strand, within A4249_RS07085at 1422.618 kb on + strand, within A4249_RS07085at 1422.618 kb on + strand, within A4249_RS07085at 1422.619 kb on - strand, within A4249_RS07085at 1422.619 kb on - strand, within A4249_RS07085at 1422.619 kb on - strand, within A4249_RS07085at 1422.619 kb on - strand, within A4249_RS07085at 1422.791 kb on + strand, within A4249_RS07085at 1422.791 kb on + strand, within A4249_RS07085at 1422.791 kb on + strand, within A4249_RS07085at 1422.791 kb on + strand, within A4249_RS07085at 1422.792 kb on - strand, within A4249_RS07085at 1422.983 kb on + strandat 1422.984 kb on - strandat 1423.008 kb on + strandat 1423.008 kb on + strandat 1423.008 kb on + strandat 1423.008 kb on + strandat 1423.008 kb on + strandat 1423.009 kb on - strandat 1423.009 kb on - strandat 1423.009 kb on - strandat 1423.033 kb on - strandat 1423.035 kb on + strandat 1423.035 kb on + strandat 1423.035 kb on + strandat 1423.036 kb on - strandat 1423.036 kb on - strandat 1423.072 kb on + strandat 1423.073 kb on - strandat 1423.073 kb on - strandat 1423.073 kb on - strandat 1423.073 kb on - strandat 1423.073 kb on - strandat 1423.278 kb on + strandat 1423.279 kb on - strandat 1423.279 kb on - strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.321 kb on + strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.322 kb on - strandat 1423.391 kb on + strandat 1423.391 kb on + strandat 1423.391 kb on + strandat 1423.391 kb on + strandat 1423.391 kb on + strandat 1423.391 kb on + strandat 1423.392 kb on - strandat 1423.730 kb on + strand, within A4249_RS07090at 1423.731 kb on - strand, within A4249_RS07090at 1423.731 kb on - strand, within A4249_RS07090at 1423.731 kb on - strand, within A4249_RS07090at 1423.744 kb on - strand, within A4249_RS07090at 1423.744 kb on - strand, within A4249_RS07090at 1423.793 kb on + strandat 1423.793 kb on + strandat 1423.793 kb on + strandat 1423.793 kb on + strandat 1423.793 kb on + strandat 1423.793 kb on + strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.794 kb on - strandat 1423.821 kb on - strandat 1423.861 kb on + strandat 1423.861 kb on + strandat 1423.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,421,332 - -0.9
1,421,332 - +0.4
1,421,332 - -0.3
1,421,332 - +0.7
1,421,332 - +0.9
1,421,332 - -0.1
1,421,332 - +0.3
1,421,333 + -0.4
1,421,405 - +0.2
1,421,679 + -0.2
1,421,679 + -0.1
1,421,680 - +0.1
1,421,680 - -1.2
1,421,841 + A4249_RS07080 0.32 -0.2
1,421,888 + A4249_RS07080 0.39 +2.5
1,421,888 + A4249_RS07080 0.39 -0.2
1,421,889 - A4249_RS07080 0.39 +0.7
1,421,889 - A4249_RS07080 0.39 +0.5
1,421,889 - A4249_RS07080 0.39 +0.1
1,421,889 - A4249_RS07080 0.39 +1.0
1,421,889 - A4249_RS07080 0.39 -1.7
1,421,946 - A4249_RS07080 0.48 +0.4
1,422,425 + A4249_RS07085 0.23 -2.2
1,422,425 + A4249_RS07085 0.23 +0.9
1,422,425 + A4249_RS07085 0.23 +1.1
1,422,425 + A4249_RS07085 0.23 +0.4
1,422,426 - A4249_RS07085 0.23 +0.1
1,422,426 - A4249_RS07085 0.23 +0.2
1,422,426 - A4249_RS07085 0.23 +0.8
1,422,426 - A4249_RS07085 0.23 -1.2
1,422,449 + A4249_RS07085 0.27 +0.4
1,422,449 + A4249_RS07085 0.27 +0.9
1,422,449 + A4249_RS07085 0.27 -0.3
1,422,450 - A4249_RS07085 0.27 +0.4
1,422,450 - A4249_RS07085 0.27 -0.8
1,422,450 - A4249_RS07085 0.27 +0.3
1,422,450 - A4249_RS07085 0.27 -0.3
1,422,450 - A4249_RS07085 0.27 -0.5
1,422,450 - A4249_RS07085 0.27 +0.7
1,422,494 + A4249_RS07085 0.35 +1.1
1,422,495 - A4249_RS07085 0.35 +1.1
1,422,495 - A4249_RS07085 0.35 -0.1
1,422,495 - A4249_RS07085 0.35 +0.6
1,422,495 - A4249_RS07085 0.35 +0.2
1,422,618 + A4249_RS07085 0.57 -0.5
1,422,618 + A4249_RS07085 0.57 +0.2
1,422,619 - A4249_RS07085 0.57 +0.4
1,422,619 - A4249_RS07085 0.57 +0.1
1,422,619 - A4249_RS07085 0.57 +0.1
1,422,619 - A4249_RS07085 0.57 +0.3
1,422,791 + A4249_RS07085 0.87 +0.9
1,422,791 + A4249_RS07085 0.87 +0.1
1,422,791 + A4249_RS07085 0.87 -0.6
1,422,791 + A4249_RS07085 0.87 +1.1
1,422,792 - A4249_RS07085 0.88 -0.8
1,422,983 + -0.1
1,422,984 - -0.5
1,423,008 + -0.5
1,423,008 + -0.5
1,423,008 + +0.3
1,423,008 + -0.1
1,423,008 + +0.4
1,423,009 - -0.5
1,423,009 - -0.3
1,423,009 - +0.5
1,423,033 - -1.4
1,423,035 + -0.6
1,423,035 + -1.0
1,423,035 + -0.8
1,423,036 - -0.7
1,423,036 - -0.3
1,423,072 + +0.8
1,423,073 - -0.4
1,423,073 - +0.3
1,423,073 - -0.4
1,423,073 - -0.8
1,423,073 - +0.6
1,423,278 + -0.1
1,423,279 - -1.9
1,423,279 - +0.2
1,423,321 + -0.3
1,423,321 + +0.4
1,423,321 + -0.3
1,423,321 + +0.5
1,423,321 + -0.3
1,423,321 + -1.0
1,423,321 + +0.5
1,423,321 + -1.4
1,423,322 - +0.0
1,423,322 - -0.4
1,423,322 - -0.3
1,423,322 - +0.4
1,423,322 - -0.6
1,423,322 - -0.0
1,423,322 - -1.8
1,423,391 + +0.1
1,423,391 + +0.3
1,423,391 + -0.2
1,423,391 + +0.3
1,423,391 + +0.2
1,423,391 + +0.3
1,423,392 - -0.6
1,423,730 + A4249_RS07090 0.79 -0.6
1,423,731 - A4249_RS07090 0.80 -0.1
1,423,731 - A4249_RS07090 0.80 +0.6
1,423,731 - A4249_RS07090 0.80 -0.2
1,423,744 - A4249_RS07090 0.82 -0.2
1,423,744 - A4249_RS07090 0.82 +0.3
1,423,793 + -0.1
1,423,793 + +0.1
1,423,793 + -0.7
1,423,793 + -0.5
1,423,793 + +1.2
1,423,793 + +0.9
1,423,794 - +0.0
1,423,794 - +0.2
1,423,794 - +0.5
1,423,794 - -0.5
1,423,794 - -0.9
1,423,794 - +0.2
1,423,794 - -1.4
1,423,794 - +0.6
1,423,794 - +0.3
1,423,794 - -0.1
1,423,794 - +0.5
1,423,821 - -2.8
1,423,861 + +1.1
1,423,861 + -0.8
1,423,861 + -1.7

Or see this region's nucleotide sequence