Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06625

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06615 and A4249_RS06620 are separated by 77 nucleotidesA4249_RS06620 and A4249_RS06625 overlap by 4 nucleotidesA4249_RS06625 and A4249_RS06630 are separated by 3 nucleotides A4249_RS06615: A4249_RS06615 - formimidoylglutamate deiminase, at 1,346,062 to 1,347,438 _RS06615 A4249_RS06620: A4249_RS06620 - N-formylglutamate deformylase, at 1,347,516 to 1,348,334 _RS06620 A4249_RS06625: A4249_RS06625 - urocanate hydratase, at 1,348,331 to 1,349,995 _RS06625 A4249_RS06630: A4249_RS06630 - histidine ammonia-lyase, at 1,349,999 to 1,351,528 _RS06630 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -2 -1 0 1 2at 1347.466 kb on + strandat 1347.466 kb on + strandat 1347.467 kb on - strandat 1347.467 kb on - strandat 1347.478 kb on + strandat 1347.666 kb on + strand, within A4249_RS06620at 1347.666 kb on + strand, within A4249_RS06620at 1347.667 kb on - strand, within A4249_RS06620at 1347.762 kb on + strand, within A4249_RS06620at 1347.770 kb on + strand, within A4249_RS06620at 1347.771 kb on - strand, within A4249_RS06620at 1347.771 kb on - strand, within A4249_RS06620at 1347.822 kb on + strand, within A4249_RS06620at 1347.823 kb on - strand, within A4249_RS06620at 1347.889 kb on - strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.076 kb on + strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.077 kb on - strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.197 kb on + strand, within A4249_RS06620at 1348.198 kb on - strand, within A4249_RS06620at 1348.198 kb on - strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.248 kb on + strand, within A4249_RS06620at 1348.283 kb on + strandat 1348.283 kb on + strandat 1348.283 kb on + strandat 1348.284 kb on - strandat 1348.284 kb on - strandat 1348.284 kb on - strandat 1348.475 kb on + strandat 1348.476 kb on - strandat 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.706 kb on + strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.707 kb on - strand, within A4249_RS06625at 1348.736 kb on + strand, within A4249_RS06625at 1348.736 kb on + strand, within A4249_RS06625at 1348.736 kb on + strand, within A4249_RS06625at 1348.737 kb on - strand, within A4249_RS06625at 1348.737 kb on - strand, within A4249_RS06625at 1348.737 kb on - strand, within A4249_RS06625at 1348.737 kb on - strand, within A4249_RS06625at 1348.737 kb on - strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.769 kb on + strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.770 kb on - strand, within A4249_RS06625at 1348.802 kb on + strand, within A4249_RS06625at 1348.802 kb on + strand, within A4249_RS06625at 1348.803 kb on - strand, within A4249_RS06625at 1348.803 kb on - strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.952 kb on + strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1348.953 kb on - strand, within A4249_RS06625at 1349.141 kb on + strand, within A4249_RS06625at 1349.141 kb on + strand, within A4249_RS06625at 1349.141 kb on + strand, within A4249_RS06625at 1349.142 kb on - strand, within A4249_RS06625at 1349.142 kb on - strand, within A4249_RS06625at 1349.289 kb on - strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.366 kb on + strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.367 kb on - strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.638 kb on + strand, within A4249_RS06625at 1349.639 kb on - strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.640 kb on + strand, within A4249_RS06625at 1349.641 kb on - strand, within A4249_RS06625at 1349.813 kb on + strand, within A4249_RS06625at 1349.814 kb on - strand, within A4249_RS06625at 1349.814 kb on - strand, within A4249_RS06625at 1350.127 kb on - strandat 1350.158 kb on + strand, within A4249_RS06630at 1350.158 kb on + strand, within A4249_RS06630at 1350.158 kb on + strand, within A4249_RS06630at 1350.159 kb on - strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.232 kb on + strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.233 kb on - strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.504 kb on + strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.505 kb on - strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630at 1350.839 kb on + strand, within A4249_RS06630

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,347,466 + -0.4
1,347,466 + +0.4
1,347,467 - -0.8
1,347,467 - +0.4
1,347,478 + +0.6
1,347,666 + A4249_RS06620 0.18 +0.2
1,347,666 + A4249_RS06620 0.18 +0.6
1,347,667 - A4249_RS06620 0.18 +0.9
1,347,762 + A4249_RS06620 0.30 +0.1
1,347,770 + A4249_RS06620 0.31 -0.7
1,347,771 - A4249_RS06620 0.31 +0.2
1,347,771 - A4249_RS06620 0.31 -1.8
1,347,822 + A4249_RS06620 0.37 +0.7
1,347,823 - A4249_RS06620 0.37 +0.3
1,347,889 - A4249_RS06620 0.46 +1.2
1,348,076 + A4249_RS06620 0.68 -0.5
1,348,076 + A4249_RS06620 0.68 -0.6
1,348,076 + A4249_RS06620 0.68 +0.2
1,348,076 + A4249_RS06620 0.68 -0.1
1,348,077 - A4249_RS06620 0.68 +0.5
1,348,077 - A4249_RS06620 0.68 +0.0
1,348,077 - A4249_RS06620 0.68 -0.5
1,348,077 - A4249_RS06620 0.68 -0.1
1,348,077 - A4249_RS06620 0.68 +1.1
1,348,197 + A4249_RS06620 0.83 +0.1
1,348,197 + A4249_RS06620 0.83 +0.4
1,348,197 + A4249_RS06620 0.83 -0.9
1,348,197 + A4249_RS06620 0.83 +0.5
1,348,197 + A4249_RS06620 0.83 -0.6
1,348,197 + A4249_RS06620 0.83 -0.8
1,348,198 - A4249_RS06620 0.83 +0.4
1,348,198 - A4249_RS06620 0.83 -0.5
1,348,248 + A4249_RS06620 0.89 -1.6
1,348,248 + A4249_RS06620 0.89 +1.5
1,348,248 + A4249_RS06620 0.89 -0.3
1,348,283 + -1.6
1,348,283 + +0.4
1,348,283 + -1.3
1,348,284 - -0.4
1,348,284 - -1.7
1,348,284 - -0.8
1,348,475 + +0.6
1,348,476 - +0.3
1,348,706 + A4249_RS06625 0.23 -0.2
1,348,706 + A4249_RS06625 0.23 +0.4
1,348,706 + A4249_RS06625 0.23 -0.1
1,348,706 + A4249_RS06625 0.23 +0.3
1,348,706 + A4249_RS06625 0.23 -0.3
1,348,706 + A4249_RS06625 0.23 +1.5
1,348,706 + A4249_RS06625 0.23 -0.3
1,348,706 + A4249_RS06625 0.23 +0.2
1,348,706 + A4249_RS06625 0.23 -1.4
1,348,706 + A4249_RS06625 0.23 -0.5
1,348,706 + A4249_RS06625 0.23 +0.2
1,348,706 + A4249_RS06625 0.23 -0.4
1,348,706 + A4249_RS06625 0.23 -0.0
1,348,706 + A4249_RS06625 0.23 -0.0
1,348,706 + A4249_RS06625 0.23 -0.5
1,348,706 + A4249_RS06625 0.23 -1.6
1,348,706 + A4249_RS06625 0.23 -1.0
1,348,706 + A4249_RS06625 0.23 +0.3
1,348,707 - A4249_RS06625 0.23 -0.3
1,348,707 - A4249_RS06625 0.23 +0.3
1,348,707 - A4249_RS06625 0.23 -0.1
1,348,707 - A4249_RS06625 0.23 -1.2
1,348,707 - A4249_RS06625 0.23 +1.5
1,348,707 - A4249_RS06625 0.23 +0.3
1,348,707 - A4249_RS06625 0.23 +1.0
1,348,707 - A4249_RS06625 0.23 -0.6
1,348,707 - A4249_RS06625 0.23 -0.4
1,348,707 - A4249_RS06625 0.23 -0.2
1,348,736 + A4249_RS06625 0.24 -0.3
1,348,736 + A4249_RS06625 0.24 +0.0
1,348,736 + A4249_RS06625 0.24 -0.6
1,348,737 - A4249_RS06625 0.24 -0.3
1,348,737 - A4249_RS06625 0.24 +1.0
1,348,737 - A4249_RS06625 0.24 +0.6
1,348,737 - A4249_RS06625 0.24 -0.5
1,348,737 - A4249_RS06625 0.24 +0.2
1,348,769 + A4249_RS06625 0.26 -1.1
1,348,769 + A4249_RS06625 0.26 -0.6
1,348,769 + A4249_RS06625 0.26 -0.2
1,348,769 + A4249_RS06625 0.26 +0.7
1,348,769 + A4249_RS06625 0.26 -0.1
1,348,769 + A4249_RS06625 0.26 -0.3
1,348,769 + A4249_RS06625 0.26 +0.1
1,348,769 + A4249_RS06625 0.26 +1.0
1,348,769 + A4249_RS06625 0.26 +0.1
1,348,770 - A4249_RS06625 0.26 +0.3
1,348,770 - A4249_RS06625 0.26 -0.1
1,348,770 - A4249_RS06625 0.26 -0.1
1,348,770 - A4249_RS06625 0.26 +0.1
1,348,770 - A4249_RS06625 0.26 -0.1
1,348,770 - A4249_RS06625 0.26 +1.8
1,348,802 + A4249_RS06625 0.28 +1.7
1,348,802 + A4249_RS06625 0.28 +0.2
1,348,803 - A4249_RS06625 0.28 -0.2
1,348,803 - A4249_RS06625 0.28 +0.1
1,348,952 + A4249_RS06625 0.37 -0.1
1,348,952 + A4249_RS06625 0.37 +0.5
1,348,952 + A4249_RS06625 0.37 -0.0
1,348,952 + A4249_RS06625 0.37 +0.0
1,348,952 + A4249_RS06625 0.37 +0.3
1,348,952 + A4249_RS06625 0.37 -0.0
1,348,952 + A4249_RS06625 0.37 -1.1
1,348,952 + A4249_RS06625 0.37 +0.4
1,348,952 + A4249_RS06625 0.37 -0.2
1,348,952 + A4249_RS06625 0.37 -0.3
1,348,952 + A4249_RS06625 0.37 +0.2
1,348,953 - A4249_RS06625 0.37 +0.3
1,348,953 - A4249_RS06625 0.37 +0.0
1,348,953 - A4249_RS06625 0.37 +0.3
1,348,953 - A4249_RS06625 0.37 +0.8
1,348,953 - A4249_RS06625 0.37 +0.4
1,348,953 - A4249_RS06625 0.37 -0.3
1,349,141 + A4249_RS06625 0.49 +0.6
1,349,141 + A4249_RS06625 0.49 -0.1
1,349,141 + A4249_RS06625 0.49 +0.7
1,349,142 - A4249_RS06625 0.49 +0.8
1,349,142 - A4249_RS06625 0.49 -0.3
1,349,289 - A4249_RS06625 0.58 +0.1
1,349,366 + A4249_RS06625 0.62 +0.6
1,349,366 + A4249_RS06625 0.62 -0.5
1,349,366 + A4249_RS06625 0.62 -0.7
1,349,366 + A4249_RS06625 0.62 -0.3
1,349,366 + A4249_RS06625 0.62 +0.2
1,349,366 + A4249_RS06625 0.62 +0.0
1,349,366 + A4249_RS06625 0.62 -0.6
1,349,366 + A4249_RS06625 0.62 +0.2
1,349,367 - A4249_RS06625 0.62 -1.3
1,349,367 - A4249_RS06625 0.62 -0.4
1,349,367 - A4249_RS06625 0.62 -0.0
1,349,367 - A4249_RS06625 0.62 +1.0
1,349,367 - A4249_RS06625 0.62 +0.5
1,349,638 + A4249_RS06625 0.78 +0.7
1,349,638 + A4249_RS06625 0.78 -1.3
1,349,638 + A4249_RS06625 0.78 -0.3
1,349,639 - A4249_RS06625 0.79 +0.9
1,349,640 + A4249_RS06625 0.79 +0.3
1,349,640 + A4249_RS06625 0.79 -0.7
1,349,640 + A4249_RS06625 0.79 -0.3
1,349,641 - A4249_RS06625 0.79 -1.0
1,349,813 + A4249_RS06625 0.89 +1.0
1,349,814 - A4249_RS06625 0.89 -0.5
1,349,814 - A4249_RS06625 0.89 -0.0
1,350,127 - +0.2
1,350,158 + A4249_RS06630 0.10 -0.2
1,350,158 + A4249_RS06630 0.10 +0.2
1,350,158 + A4249_RS06630 0.10 +0.6
1,350,159 - A4249_RS06630 0.10 +0.3
1,350,232 + A4249_RS06630 0.15 -0.0
1,350,232 + A4249_RS06630 0.15 -0.1
1,350,232 + A4249_RS06630 0.15 -0.5
1,350,233 - A4249_RS06630 0.15 +0.1
1,350,233 - A4249_RS06630 0.15 -0.2
1,350,233 - A4249_RS06630 0.15 -1.4
1,350,233 - A4249_RS06630 0.15 +0.1
1,350,233 - A4249_RS06630 0.15 +0.6
1,350,233 - A4249_RS06630 0.15 +0.9
1,350,504 + A4249_RS06630 0.33 -0.0
1,350,504 + A4249_RS06630 0.33 -0.1
1,350,504 + A4249_RS06630 0.33 +0.4
1,350,505 - A4249_RS06630 0.33 +0.9
1,350,505 - A4249_RS06630 0.33 +0.2
1,350,505 - A4249_RS06630 0.33 +0.4
1,350,839 + A4249_RS06630 0.55 -0.2
1,350,839 + A4249_RS06630 0.55 +0.2
1,350,839 + A4249_RS06630 0.55 +0.1

Or see this region's nucleotide sequence