Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05390

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05375 and A4249_RS05380 are separated by 139 nucleotidesA4249_RS05380 and A4249_RS05385 overlap by 4 nucleotidesA4249_RS05385 and A4249_RS05390 are separated by 25 nucleotidesA4249_RS05390 and A4249_RS05395 overlap by 1 nucleotidesA4249_RS05395 and A4249_RS05400 are separated by 1 nucleotides A4249_RS05375: A4249_RS05375 - damage-inducible protein, at 1,100,791 to 1,101,546 _RS05375 A4249_RS05380: A4249_RS05380 - hypothetical protein, at 1,101,686 to 1,102,024 _RS05380 A4249_RS05385: A4249_RS05385 - DUF1810 domain-containing protein, at 1,102,021 to 1,102,461 _RS05385 A4249_RS05390: A4249_RS05390 - SOS response-associated peptidase family protein, at 1,102,487 to 1,103,194 _RS05390 A4249_RS05395: A4249_RS05395 - hypothetical protein, at 1,103,194 to 1,103,640 _RS05395 A4249_RS05400: A4249_RS05400 - hypothetical protein, at 1,103,642 to 1,103,878 _RS05400 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1at 1101.729 kb on - strand, within A4249_RS05380at 1101.729 kb on - strand, within A4249_RS05380at 1101.983 kb on + strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1101.984 kb on - strand, within A4249_RS05380at 1102.049 kb on + strandat 1102.049 kb on + strandat 1102.050 kb on - strandat 1102.118 kb on + strand, within A4249_RS05385at 1102.118 kb on + strand, within A4249_RS05385at 1102.119 kb on - strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.174 kb on + strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.175 kb on - strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.207 kb on + strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.208 kb on - strand, within A4249_RS05385at 1102.226 kb on + strand, within A4249_RS05385at 1102.227 kb on - strand, within A4249_RS05385at 1102.227 kb on - strand, within A4249_RS05385at 1102.337 kb on + strand, within A4249_RS05385at 1102.337 kb on + strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.338 kb on - strand, within A4249_RS05385at 1102.427 kb on + strandat 1102.427 kb on + strandat 1102.427 kb on + strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.428 kb on - strandat 1102.460 kb on - strandat 1102.460 kb on - strandat 1102.467 kb on + strandat 1102.479 kb on + strandat 1102.479 kb on + strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.480 kb on - strandat 1102.488 kb on + strandat 1102.488 kb on + strandat 1102.488 kb on + strandat 1102.499 kb on - strandat 1102.788 kb on + strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1102.789 kb on - strand, within A4249_RS05390at 1103.094 kb on + strand, within A4249_RS05390at 1103.094 kb on + strand, within A4249_RS05390at 1103.153 kb on + strandat 1103.153 kb on + strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.154 kb on - strandat 1103.182 kb on - strandat 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.246 kb on + strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.247 kb on - strand, within A4249_RS05395at 1103.437 kb on - strand, within A4249_RS05395at 1103.487 kb on - strand, within A4249_RS05395at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.672 kb on + strand, within A4249_RS05400at 1103.673 kb on - strand, within A4249_RS05400at 1103.673 kb on - strand, within A4249_RS05400at 1103.673 kb on - strand, within A4249_RS05400at 1103.673 kb on - strand, within A4249_RS05400at 1103.673 kb on - strand, within A4249_RS05400at 1103.768 kb on + strand, within A4249_RS05400at 1103.769 kb on - strand, within A4249_RS05400at 1103.948 kb on + strandat 1103.948 kb on + strandat 1103.948 kb on + strandat 1103.949 kb on - strandat 1103.949 kb on - strandat 1103.949 kb on - strandat 1103.949 kb on - strandat 1103.949 kb on - strandat 1103.957 kb on + strandat 1103.958 kb on - strandat 1103.973 kb on - strandat 1103.973 kb on - strandat 1104.168 kb on + strandat 1104.168 kb on + strandat 1104.169 kb on - strandat 1104.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,101,729 - A4249_RS05380 0.13 +0.2
1,101,729 - A4249_RS05380 0.13 -0.7
1,101,983 + A4249_RS05380 0.88 -0.6
1,101,984 - A4249_RS05380 0.88 -0.0
1,101,984 - A4249_RS05380 0.88 +0.1
1,101,984 - A4249_RS05380 0.88 +0.3
1,102,049 + -0.5
1,102,049 + -3.2
1,102,050 - -0.7
1,102,118 + A4249_RS05385 0.22 -0.8
1,102,118 + A4249_RS05385 0.22 +0.5
1,102,119 - A4249_RS05385 0.22 +0.1
1,102,174 + A4249_RS05385 0.35 +1.0
1,102,174 + A4249_RS05385 0.35 +1.1
1,102,174 + A4249_RS05385 0.35 +0.6
1,102,174 + A4249_RS05385 0.35 +0.2
1,102,175 - A4249_RS05385 0.35 -0.9
1,102,175 - A4249_RS05385 0.35 -0.9
1,102,175 - A4249_RS05385 0.35 +0.0
1,102,175 - A4249_RS05385 0.35 -0.2
1,102,175 - A4249_RS05385 0.35 -0.3
1,102,175 - A4249_RS05385 0.35 -0.1
1,102,175 - A4249_RS05385 0.35 -0.3
1,102,207 + A4249_RS05385 0.42 -0.3
1,102,207 + A4249_RS05385 0.42 -0.1
1,102,207 + A4249_RS05385 0.42 -0.1
1,102,207 + A4249_RS05385 0.42 -2.3
1,102,208 - A4249_RS05385 0.42 +0.3
1,102,208 - A4249_RS05385 0.42 -1.5
1,102,208 - A4249_RS05385 0.42 -0.5
1,102,208 - A4249_RS05385 0.42 -0.2
1,102,208 - A4249_RS05385 0.42 -1.0
1,102,226 + A4249_RS05385 0.46 +0.2
1,102,227 - A4249_RS05385 0.47 -0.1
1,102,227 - A4249_RS05385 0.47 +0.6
1,102,337 + A4249_RS05385 0.72 -0.1
1,102,337 + A4249_RS05385 0.72 +0.6
1,102,338 - A4249_RS05385 0.72 -0.9
1,102,338 - A4249_RS05385 0.72 -1.4
1,102,338 - A4249_RS05385 0.72 +0.8
1,102,338 - A4249_RS05385 0.72 +0.0
1,102,427 + +0.4
1,102,427 + +0.9
1,102,427 + -0.3
1,102,428 - -0.3
1,102,428 - +0.2
1,102,428 - +0.4
1,102,428 - -1.0
1,102,428 - +0.2
1,102,428 - -0.1
1,102,428 - -0.1
1,102,460 - +0.9
1,102,460 - +0.4
1,102,467 + -0.4
1,102,479 + +0.5
1,102,479 + +1.6
1,102,480 - -0.0
1,102,480 - +0.2
1,102,480 - -0.3
1,102,480 - +0.5
1,102,488 + -1.1
1,102,488 + -0.6
1,102,488 + +0.2
1,102,499 - +0.1
1,102,788 + A4249_RS05390 0.43 +1.0
1,102,789 - A4249_RS05390 0.43 +0.9
1,102,789 - A4249_RS05390 0.43 -0.5
1,102,789 - A4249_RS05390 0.43 -1.2
1,102,789 - A4249_RS05390 0.43 -0.3
1,102,789 - A4249_RS05390 0.43 -0.4
1,103,094 + A4249_RS05390 0.86 -0.7
1,103,094 + A4249_RS05390 0.86 -0.7
1,103,153 + -0.2
1,103,153 + -0.1
1,103,154 - -0.4
1,103,154 - +0.3
1,103,154 - -0.7
1,103,182 - +0.1
1,103,246 + A4249_RS05395 0.12 -0.3
1,103,246 + A4249_RS05395 0.12 +0.4
1,103,246 + A4249_RS05395 0.12 +0.1
1,103,246 + A4249_RS05395 0.12 -0.8
1,103,246 + A4249_RS05395 0.12 -0.8
1,103,246 + A4249_RS05395 0.12 -0.1
1,103,246 + A4249_RS05395 0.12 -0.4
1,103,246 + A4249_RS05395 0.12 -0.6
1,103,247 - A4249_RS05395 0.12 -0.1
1,103,247 - A4249_RS05395 0.12 +0.0
1,103,247 - A4249_RS05395 0.12 +0.4
1,103,247 - A4249_RS05395 0.12 -0.1
1,103,247 - A4249_RS05395 0.12 +0.1
1,103,247 - A4249_RS05395 0.12 -0.7
1,103,437 - A4249_RS05395 0.54 -0.2
1,103,487 - A4249_RS05395 0.66 +0.2
1,103,672 + A4249_RS05400 0.13 +1.0
1,103,672 + A4249_RS05400 0.13 -1.0
1,103,672 + A4249_RS05400 0.13 -0.2
1,103,672 + A4249_RS05400 0.13 -1.3
1,103,672 + A4249_RS05400 0.13 -0.7
1,103,672 + A4249_RS05400 0.13 -0.0
1,103,672 + A4249_RS05400 0.13 -1.0
1,103,672 + A4249_RS05400 0.13 -0.2
1,103,672 + A4249_RS05400 0.13 +1.6
1,103,672 + A4249_RS05400 0.13 +0.1
1,103,672 + A4249_RS05400 0.13 +0.1
1,103,673 - A4249_RS05400 0.13 +0.0
1,103,673 - A4249_RS05400 0.13 +0.5
1,103,673 - A4249_RS05400 0.13 +0.1
1,103,673 - A4249_RS05400 0.13 -0.9
1,103,673 - A4249_RS05400 0.13 +1.4
1,103,768 + A4249_RS05400 0.53 -0.3
1,103,769 - A4249_RS05400 0.54 -0.4
1,103,948 + +0.5
1,103,948 + +0.4
1,103,948 + +0.3
1,103,949 - +0.3
1,103,949 - +0.6
1,103,949 - +0.3
1,103,949 - +1.0
1,103,949 - -0.3
1,103,957 + -0.4
1,103,958 - +0.2
1,103,973 - -1.1
1,103,973 - -1.0
1,104,168 + +0.4
1,104,168 + -0.1
1,104,169 - +0.2
1,104,182 + -0.5

Or see this region's nucleotide sequence