Experiment: Uracil 0.8921 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04200 and A4249_RS04205 are separated by 23 nucleotides A4249_RS04205 and A4249_RS04210 are separated by 29 nucleotides A4249_RS04210 and A4249_RS04215 overlap by 1 nucleotides A4249_RS04215 and A4249_RS04220 are separated by 39 nucleotides
A4249_RS04200: A4249_RS04200 - pseudouridine synthase, at 869,811 to 871,364
_RS04200
A4249_RS04205: A4249_RS04205 - GFA family protein, at 871,388 to 871,798
_RS04205
A4249_RS04210: A4249_RS04210 - TMEM175 family protein, at 871,828 to 872,469
_RS04210
A4249_RS04215: A4249_RS04215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 872,469 to 873,044
_RS04215
A4249_RS04220: A4249_RS04220 - low molecular weight phosphotyrosine protein phosphatase, at 873,084 to 873,536
_RS04220
Position (kb) 871
872
873 Strain fitness (log2 ratio) -2
-1
0
1 at 870.828 kb on + strand, within A4249_RS04200 at 870.828 kb on + strand, within A4249_RS04200 at 870.828 kb on + strand, within A4249_RS04200 at 870.828 kb on + strand, within A4249_RS04200 at 870.829 kb on - strand, within A4249_RS04200 at 870.829 kb on - strand, within A4249_RS04200 at 870.829 kb on - strand, within A4249_RS04200 at 870.830 kb on + strand, within A4249_RS04200 at 870.830 kb on + strand, within A4249_RS04200 at 870.831 kb on - strand, within A4249_RS04200 at 870.860 kb on + strand, within A4249_RS04200 at 870.860 kb on + strand, within A4249_RS04200 at 870.860 kb on + strand, within A4249_RS04200 at 870.861 kb on - strand, within A4249_RS04200 at 870.861 kb on - strand, within A4249_RS04200 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.556 kb on + strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.557 kb on - strand, within A4249_RS04205 at 871.724 kb on + strand, within A4249_RS04205 at 871.724 kb on + strand, within A4249_RS04205 at 871.724 kb on + strand, within A4249_RS04205 at 871.724 kb on + strand, within A4249_RS04205 at 871.724 kb on + strand, within A4249_RS04205 at 871.725 kb on - strand, within A4249_RS04205 at 871.725 kb on - strand, within A4249_RS04205 at 871.725 kb on - strand, within A4249_RS04205 at 872.162 kb on - strand, within A4249_RS04210 at 872.162 kb on - strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.197 kb on + strand, within A4249_RS04210 at 872.198 kb on - strand, within A4249_RS04210 at 872.198 kb on - strand, within A4249_RS04210 at 872.198 kb on - strand, within A4249_RS04210 at 872.198 kb on - strand, within A4249_RS04210 at 872.198 kb on - strand, within A4249_RS04210 at 872.242 kb on + strand, within A4249_RS04210 at 872.242 kb on + strand, within A4249_RS04210 at 872.628 kb on + strand, within A4249_RS04215 at 872.628 kb on + strand, within A4249_RS04215 at 872.628 kb on + strand, within A4249_RS04215 at 872.742 kb on + strand, within A4249_RS04215 at 872.743 kb on - strand, within A4249_RS04215 at 872.970 kb on + strand, within A4249_RS04215 at 872.994 kb on + strand at 872.994 kb on + strand at 872.995 kb on - strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.085 kb on + strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.086 kb on - strand at 873.164 kb on - strand, within A4249_RS04220 at 873.164 kb on - strand, within A4249_RS04220 at 873.164 kb on - strand, within A4249_RS04220
Per-strain Table
Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C) remove 870,828 + A4249_RS04200 0.65 +0.4 870,828 + A4249_RS04200 0.65 -0.6 870,828 + A4249_RS04200 0.65 -0.3 870,828 + A4249_RS04200 0.65 +0.9 870,829 - A4249_RS04200 0.66 +0.6 870,829 - A4249_RS04200 0.66 -1.6 870,829 - A4249_RS04200 0.66 -0.1 870,830 + A4249_RS04200 0.66 +0.9 870,830 + A4249_RS04200 0.66 -0.3 870,831 - A4249_RS04200 0.66 +0.7 870,860 + A4249_RS04200 0.68 +0.7 870,860 + A4249_RS04200 0.68 -0.0 870,860 + A4249_RS04200 0.68 -0.9 870,861 - A4249_RS04200 0.68 -0.4 870,861 - A4249_RS04200 0.68 +0.0 871,556 + A4249_RS04205 0.41 -0.1 871,556 + A4249_RS04205 0.41 -0.4 871,556 + A4249_RS04205 0.41 -0.0 871,556 + A4249_RS04205 0.41 -0.8 871,556 + A4249_RS04205 0.41 +0.1 871,556 + A4249_RS04205 0.41 +0.4 871,556 + A4249_RS04205 0.41 +0.9 871,556 + A4249_RS04205 0.41 -0.2 871,556 + A4249_RS04205 0.41 -0.2 871,556 + A4249_RS04205 0.41 +0.4 871,556 + A4249_RS04205 0.41 +0.5 871,556 + A4249_RS04205 0.41 +0.5 871,557 - A4249_RS04205 0.41 -0.5 871,557 - A4249_RS04205 0.41 -0.6 871,557 - A4249_RS04205 0.41 -0.5 871,557 - A4249_RS04205 0.41 -0.6 871,557 - A4249_RS04205 0.41 -0.3 871,557 - A4249_RS04205 0.41 -0.2 871,557 - A4249_RS04205 0.41 +0.7 871,557 - A4249_RS04205 0.41 +0.3 871,557 - A4249_RS04205 0.41 -0.2 871,557 - A4249_RS04205 0.41 +0.2 871,557 - A4249_RS04205 0.41 +0.1 871,557 - A4249_RS04205 0.41 -0.4 871,557 - A4249_RS04205 0.41 -0.2 871,557 - A4249_RS04205 0.41 -0.1 871,724 + A4249_RS04205 0.82 +0.0 871,724 + A4249_RS04205 0.82 +0.1 871,724 + A4249_RS04205 0.82 -0.6 871,724 + A4249_RS04205 0.82 -0.2 871,724 + A4249_RS04205 0.82 -0.7 871,725 - A4249_RS04205 0.82 -0.0 871,725 - A4249_RS04205 0.82 +0.5 871,725 - A4249_RS04205 0.82 -0.2 872,162 - A4249_RS04210 0.52 -0.7 872,162 - A4249_RS04210 0.52 +0.2 872,197 + A4249_RS04210 0.57 -1.2 872,197 + A4249_RS04210 0.57 -1.3 872,197 + A4249_RS04210 0.57 -0.3 872,197 + A4249_RS04210 0.57 +0.4 872,197 + A4249_RS04210 0.57 +0.1 872,197 + A4249_RS04210 0.57 -0.5 872,198 - A4249_RS04210 0.58 +0.4 872,198 - A4249_RS04210 0.58 -0.3 872,198 - A4249_RS04210 0.58 -1.2 872,198 - A4249_RS04210 0.58 -1.2 872,198 - A4249_RS04210 0.58 +0.0 872,242 + A4249_RS04210 0.64 -1.4 872,242 + A4249_RS04210 0.64 -0.4 872,628 + A4249_RS04215 0.28 -0.3 872,628 + A4249_RS04215 0.28 -1.2 872,628 + A4249_RS04215 0.28 -0.4 872,742 + A4249_RS04215 0.47 -0.5 872,743 - A4249_RS04215 0.48 +0.9 872,970 + A4249_RS04215 0.87 -1.6 872,994 + +0.0 872,994 + -2.1 872,995 - -0.8 873,085 + +0.3 873,085 + +0.1 873,085 + -0.3 873,085 + +0.3 873,086 - -0.4 873,086 - -0.8 873,086 - +1.5 873,086 - -0.6 873,086 - +0.3 873,086 - +0.5 873,164 - A4249_RS04220 0.18 -0.1 873,164 - A4249_RS04220 0.18 +0.1 873,164 - A4249_RS04220 0.18 +0.6
Or see this region's nucleotide sequence