Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02885

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02875 and A4249_RS02880 are separated by 44 nucleotidesA4249_RS02880 and A4249_RS02885 are separated by 73 nucleotidesA4249_RS02885 and A4249_RS02890 are separated by 94 nucleotidesA4249_RS02890 and A4249_RS02895 are separated by 45 nucleotides A4249_RS02875: A4249_RS02875 - autotransporter assembly complex family protein, at 611,346 to 613,136 _RS02875 A4249_RS02880: A4249_RS02880 - hypothetical protein, at 613,181 to 613,444 _RS02880 A4249_RS02885: A4249_RS02885 - CaiB/BaiF CoA-transferase family protein, at 613,518 to 614,600 _RS02885 A4249_RS02890: A4249_RS02890 - tRNA-Lys, at 614,695 to 614,771 _RS02890 A4249_RS02895: A4249_RS02895 - PAS domain-containing protein, at 614,817 to 617,246 _RS02895 Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1 2 3at 612.589 kb on + strand, within A4249_RS02875at 612.590 kb on - strand, within A4249_RS02875at 612.627 kb on + strand, within A4249_RS02875at 612.628 kb on - strand, within A4249_RS02875at 612.658 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.901 kb on + strand, within A4249_RS02875at 612.902 kb on - strand, within A4249_RS02875at 612.902 kb on - strand, within A4249_RS02875at 612.904 kb on + strand, within A4249_RS02875at 612.904 kb on + strand, within A4249_RS02875at 612.905 kb on - strand, within A4249_RS02875at 613.122 kb on - strandat 613.185 kb on + strandat 613.185 kb on + strandat 613.185 kb on + strandat 613.185 kb on + strandat 613.186 kb on - strandat 613.186 kb on - strandat 613.186 kb on - strandat 613.186 kb on - strandat 613.186 kb on - strandat 613.249 kb on + strand, within A4249_RS02880at 613.250 kb on - strand, within A4249_RS02880at 613.250 kb on - strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.353 kb on + strand, within A4249_RS02880at 613.354 kb on - strand, within A4249_RS02880at 613.354 kb on - strand, within A4249_RS02880at 613.484 kb on + strandat 613.557 kb on + strandat 613.558 kb on - strandat 613.558 kb on - strandat 613.558 kb on - strandat 613.558 kb on - strandat 613.558 kb on - strandat 613.558 kb on - strandat 613.593 kb on + strandat 613.593 kb on + strandat 613.593 kb on + strandat 613.593 kb on + strandat 613.594 kb on - strandat 613.804 kb on + strand, within A4249_RS02885at 613.804 kb on + strand, within A4249_RS02885at 613.805 kb on - strand, within A4249_RS02885at 613.805 kb on - strand, within A4249_RS02885at 613.855 kb on + strand, within A4249_RS02885at 613.855 kb on + strand, within A4249_RS02885at 613.855 kb on + strand, within A4249_RS02885at 613.856 kb on - strand, within A4249_RS02885at 613.856 kb on - strand, within A4249_RS02885at 613.909 kb on + strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.919 kb on - strand, within A4249_RS02885at 614.130 kb on + strand, within A4249_RS02885at 614.131 kb on - strand, within A4249_RS02885at 614.131 kb on - strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.308 kb on + strand, within A4249_RS02885at 614.308 kb on + strand, within A4249_RS02885at 614.309 kb on - strand, within A4249_RS02885at 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.611 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.775 kb on - strandat 614.775 kb on - strandat 614.775 kb on - strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.885 kb on - strandat 614.885 kb on - strandat 614.885 kb on - strandat 615.086 kb on + strand, within A4249_RS02895at 615.087 kb on - strand, within A4249_RS02895at 615.093 kb on - strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.107 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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612,589 + A4249_RS02875 0.69 +0.4
612,590 - A4249_RS02875 0.69 -1.2
612,627 + A4249_RS02875 0.72 -0.7
612,628 - A4249_RS02875 0.72 +0.4
612,658 + A4249_RS02875 0.73 +0.4
612,901 + A4249_RS02875 0.87 -0.8
612,901 + A4249_RS02875 0.87 +1.1
612,901 + A4249_RS02875 0.87 -0.8
612,901 + A4249_RS02875 0.87 +1.0
612,901 + A4249_RS02875 0.87 +1.6
612,901 + A4249_RS02875 0.87 -1.4
612,901 + A4249_RS02875 0.87 +1.2
612,902 - A4249_RS02875 0.87 -0.3
612,902 - A4249_RS02875 0.87 -0.6
612,904 + A4249_RS02875 0.87 -1.1
612,904 + A4249_RS02875 0.87 -0.2
612,905 - A4249_RS02875 0.87 -0.4
613,122 - +0.0
613,185 + -0.3
613,185 + +0.4
613,185 + -0.5
613,185 + +0.7
613,186 - -0.1
613,186 - -0.1
613,186 - -1.1
613,186 - +0.2
613,186 - -1.0
613,249 + A4249_RS02880 0.26 +0.3
613,250 - A4249_RS02880 0.26 +0.2
613,250 - A4249_RS02880 0.26 +3.2
613,353 + A4249_RS02880 0.65 +0.2
613,353 + A4249_RS02880 0.65 -0.3
613,353 + A4249_RS02880 0.65 +0.0
613,353 + A4249_RS02880 0.65 -0.3
613,353 + A4249_RS02880 0.65 +0.1
613,353 + A4249_RS02880 0.65 -0.3
613,353 + A4249_RS02880 0.65 -0.3
613,354 - A4249_RS02880 0.66 -0.4
613,354 - A4249_RS02880 0.66 +0.2
613,484 + +0.1
613,557 + +0.0
613,558 - -0.1
613,558 - -0.5
613,558 - -0.1
613,558 - +0.2
613,558 - -0.5
613,558 - +0.6
613,593 + -0.1
613,593 + +0.3
613,593 + -0.6
613,593 + -1.0
613,594 - +0.3
613,804 + A4249_RS02885 0.26 +0.2
613,804 + A4249_RS02885 0.26 -0.5
613,805 - A4249_RS02885 0.27 -1.1
613,805 - A4249_RS02885 0.27 +0.5
613,855 + A4249_RS02885 0.31 -0.6
613,855 + A4249_RS02885 0.31 -0.4
613,855 + A4249_RS02885 0.31 -0.6
613,856 - A4249_RS02885 0.31 -1.1
613,856 - A4249_RS02885 0.31 -0.1
613,909 + A4249_RS02885 0.36 +0.5
613,910 - A4249_RS02885 0.36 -0.6
613,910 - A4249_RS02885 0.36 -0.0
613,910 - A4249_RS02885 0.36 +0.8
613,910 - A4249_RS02885 0.36 +0.2
613,910 - A4249_RS02885 0.36 +0.0
613,918 + A4249_RS02885 0.37 +0.1
613,918 + A4249_RS02885 0.37 -0.4
613,918 + A4249_RS02885 0.37 -0.2
613,919 - A4249_RS02885 0.37 +0.9
614,130 + A4249_RS02885 0.57 +0.1
614,131 - A4249_RS02885 0.57 -0.6
614,131 - A4249_RS02885 0.57 +0.2
614,200 + A4249_RS02885 0.63 +0.2
614,200 + A4249_RS02885 0.63 +0.1
614,200 + A4249_RS02885 0.63 +0.4
614,200 + A4249_RS02885 0.63 +0.1
614,200 + A4249_RS02885 0.63 +0.5
614,200 + A4249_RS02885 0.63 +0.5
614,200 + A4249_RS02885 0.63 +1.1
614,200 + A4249_RS02885 0.63 -0.1
614,201 - A4249_RS02885 0.63 -1.3
614,201 - A4249_RS02885 0.63 -0.0
614,201 - A4249_RS02885 0.63 -0.4
614,201 - A4249_RS02885 0.63 -1.1
614,201 - A4249_RS02885 0.63 -2.2
614,201 - A4249_RS02885 0.63 -0.4
614,201 - A4249_RS02885 0.63 +0.8
614,201 - A4249_RS02885 0.63 -0.7
614,308 + A4249_RS02885 0.73 +1.0
614,308 + A4249_RS02885 0.73 -0.4
614,309 - A4249_RS02885 0.73 +1.0
614,589 + -0.8
614,589 + -0.5
614,589 + -0.4
614,589 + -0.3
614,589 + +0.0
614,590 - -0.4
614,590 - +0.8
614,590 - -0.1
614,590 - +0.0
614,590 - +0.5
614,611 + -0.5
614,774 + -0.1
614,774 + +0.1
614,774 + +0.1
614,774 + +0.2
614,775 - +0.3
614,775 - -0.2
614,775 - +0.6
614,884 + -0.7
614,884 + -0.5
614,884 + +1.0
614,884 + +1.0
614,885 - -0.9
614,885 - +0.1
614,885 - -1.1
615,086 + A4249_RS02895 0.11 +0.3
615,087 - A4249_RS02895 0.11 +0.2
615,093 - A4249_RS02895 0.11 -0.4
615,106 + A4249_RS02895 0.12 +1.2
615,106 + A4249_RS02895 0.12 -0.4
615,106 + A4249_RS02895 0.12 -0.4
615,107 - A4249_RS02895 0.12 +0.5
615,416 - A4249_RS02895 0.25 +0.0
615,416 - A4249_RS02895 0.25 -1.2
615,416 - A4249_RS02895 0.25 +1.0

Or see this region's nucleotide sequence