Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02655

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02645 and A4249_RS02650 are separated by 88 nucleotidesA4249_RS02650 and A4249_RS02655 are separated by 5 nucleotidesA4249_RS02655 and A4249_RS02660 are separated by 101 nucleotides A4249_RS02645: A4249_RS02645 - cobalamin biosynthesis protein CbiG, at 566,368 to 567,285 _RS02645 A4249_RS02650: A4249_RS02650 - hypothetical protein, at 567,374 to 567,889 _RS02650 A4249_RS02655: A4249_RS02655 - exodeoxyribonuclease III, at 567,895 to 568,680 _RS02655 A4249_RS02660: A4249_RS02660 - hypothetical protein, at 568,782 to 569,771 _RS02660 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2at 567.167 kb on + strand, within A4249_RS02645at 567.168 kb on - strand, within A4249_RS02645at 567.168 kb on - strand, within A4249_RS02645at 567.261 kb on + strandat 567.261 kb on + strandat 567.262 kb on - strandat 567.263 kb on + strandat 567.263 kb on + strandat 567.263 kb on + strandat 567.263 kb on + strandat 567.263 kb on + strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.264 kb on - strandat 567.300 kb on + strandat 567.300 kb on + strandat 567.301 kb on - strandat 567.301 kb on - strandat 567.301 kb on - strandat 567.335 kb on - strandat 567.645 kb on + strand, within A4249_RS02650at 567.645 kb on + strand, within A4249_RS02650at 567.646 kb on - strand, within A4249_RS02650at 567.646 kb on - strand, within A4249_RS02650at 567.904 kb on + strandat 567.905 kb on - strandat 567.905 kb on - strandat 567.905 kb on - strandat 567.905 kb on - strandat 567.905 kb on - strandat 568.064 kb on + strand, within A4249_RS02655at 568.065 kb on - strand, within A4249_RS02655at 568.065 kb on - strand, within A4249_RS02655at 568.065 kb on - strand, within A4249_RS02655at 568.065 kb on - strand, within A4249_RS02655at 568.079 kb on + strand, within A4249_RS02655at 568.079 kb on + strand, within A4249_RS02655at 568.079 kb on + strand, within A4249_RS02655at 568.080 kb on - strand, within A4249_RS02655at 568.080 kb on - strand, within A4249_RS02655at 568.080 kb on - strand, within A4249_RS02655at 568.080 kb on - strand, within A4249_RS02655at 568.080 kb on - strand, within A4249_RS02655at 568.232 kb on + strand, within A4249_RS02655at 568.232 kb on + strand, within A4249_RS02655at 568.232 kb on + strand, within A4249_RS02655at 568.233 kb on - strand, within A4249_RS02655at 568.233 kb on - strand, within A4249_RS02655at 568.316 kb on + strand, within A4249_RS02655at 568.316 kb on + strand, within A4249_RS02655at 568.316 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.358 kb on + strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.359 kb on - strand, within A4249_RS02655at 568.407 kb on + strand, within A4249_RS02655at 568.407 kb on + strand, within A4249_RS02655at 568.407 kb on + strand, within A4249_RS02655at 568.407 kb on + strand, within A4249_RS02655at 568.408 kb on - strand, within A4249_RS02655at 568.409 kb on + strand, within A4249_RS02655at 568.410 kb on - strand, within A4249_RS02655at 568.410 kb on - strand, within A4249_RS02655at 568.469 kb on + strand, within A4249_RS02655at 568.469 kb on + strand, within A4249_RS02655at 568.469 kb on + strand, within A4249_RS02655at 568.470 kb on - strand, within A4249_RS02655at 568.470 kb on - strand, within A4249_RS02655at 568.470 kb on - strand, within A4249_RS02655at 568.470 kb on - strand, within A4249_RS02655at 568.496 kb on + strand, within A4249_RS02655at 568.496 kb on + strand, within A4249_RS02655at 568.496 kb on + strand, within A4249_RS02655at 568.496 kb on + strand, within A4249_RS02655at 568.497 kb on - strand, within A4249_RS02655at 568.497 kb on - strand, within A4249_RS02655at 568.497 kb on - strand, within A4249_RS02655at 568.497 kb on - strand, within A4249_RS02655at 568.526 kb on + strand, within A4249_RS02655at 568.526 kb on + strand, within A4249_RS02655at 568.526 kb on + strand, within A4249_RS02655at 568.526 kb on + strand, within A4249_RS02655at 568.527 kb on - strand, within A4249_RS02655at 568.527 kb on - strand, within A4249_RS02655at 568.692 kb on + strandat 568.693 kb on - strandat 568.783 kb on + strandat 568.784 kb on - strandat 568.784 kb on - strandat 568.784 kb on - strandat 568.784 kb on - strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.873 kb on + strandat 568.945 kb on + strand, within A4249_RS02660at 568.945 kb on + strand, within A4249_RS02660at 568.945 kb on + strand, within A4249_RS02660at 568.945 kb on + strand, within A4249_RS02660at 568.945 kb on + strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 568.946 kb on - strand, within A4249_RS02660at 569.031 kb on + strand, within A4249_RS02660at 569.248 kb on + strand, within A4249_RS02660at 569.248 kb on + strand, within A4249_RS02660at 569.248 kb on + strand, within A4249_RS02660at 569.249 kb on - strand, within A4249_RS02660at 569.249 kb on - strand, within A4249_RS02660at 569.249 kb on - strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.298 kb on + strand, within A4249_RS02660at 569.299 kb on - strand, within A4249_RS02660at 569.299 kb on - strand, within A4249_RS02660at 569.299 kb on - strand, within A4249_RS02660at 569.299 kb on - strand, within A4249_RS02660at 569.347 kb on + strand, within A4249_RS02660at 569.348 kb on - strand, within A4249_RS02660at 569.348 kb on - strand, within A4249_RS02660at 569.424 kb on + strand, within A4249_RS02660at 569.424 kb on + strand, within A4249_RS02660at 569.424 kb on + strand, within A4249_RS02660at 569.425 kb on - strand, within A4249_RS02660at 569.425 kb on - strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.431 kb on + strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660at 569.432 kb on - strand, within A4249_RS02660

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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567,167 + A4249_RS02645 0.87 +0.3
567,168 - A4249_RS02645 0.87 +0.6
567,168 - A4249_RS02645 0.87 +1.6
567,261 + +0.6
567,261 + -0.4
567,262 - +1.0
567,263 + +1.6
567,263 + +0.9
567,263 + +0.4
567,263 + -0.3
567,263 + -0.7
567,264 - +0.1
567,264 - +1.5
567,264 - -0.3
567,264 - +0.2
567,264 - -0.9
567,264 - +0.6
567,264 - -0.1
567,264 - -0.4
567,300 + +1.3
567,300 + -1.1
567,301 - -1.5
567,301 - -0.1
567,301 - +0.5
567,335 - +0.1
567,645 + A4249_RS02650 0.53 -0.6
567,645 + A4249_RS02650 0.53 -0.0
567,646 - A4249_RS02650 0.53 +0.6
567,646 - A4249_RS02650 0.53 -0.8
567,904 + -0.1
567,905 - -0.4
567,905 - -0.6
567,905 - +0.0
567,905 - +1.2
567,905 - -0.2
568,064 + A4249_RS02655 0.22 -0.6
568,065 - A4249_RS02655 0.22 -0.4
568,065 - A4249_RS02655 0.22 -0.5
568,065 - A4249_RS02655 0.22 -0.8
568,065 - A4249_RS02655 0.22 -1.5
568,079 + A4249_RS02655 0.23 +0.2
568,079 + A4249_RS02655 0.23 -0.1
568,079 + A4249_RS02655 0.23 -1.0
568,080 - A4249_RS02655 0.24 +0.7
568,080 - A4249_RS02655 0.24 +0.2
568,080 - A4249_RS02655 0.24 -0.9
568,080 - A4249_RS02655 0.24 -0.8
568,080 - A4249_RS02655 0.24 +0.5
568,232 + A4249_RS02655 0.43 -0.0
568,232 + A4249_RS02655 0.43 +1.1
568,232 + A4249_RS02655 0.43 -0.2
568,233 - A4249_RS02655 0.43 +0.8
568,233 - A4249_RS02655 0.43 -0.7
568,316 + A4249_RS02655 0.54 -0.2
568,316 + A4249_RS02655 0.54 -0.7
568,316 + A4249_RS02655 0.54 -0.0
568,358 + A4249_RS02655 0.59 -0.1
568,358 + A4249_RS02655 0.59 +0.9
568,358 + A4249_RS02655 0.59 -0.3
568,358 + A4249_RS02655 0.59 +0.8
568,358 + A4249_RS02655 0.59 +0.1
568,358 + A4249_RS02655 0.59 -0.1
568,358 + A4249_RS02655 0.59 +1.0
568,358 + A4249_RS02655 0.59 +0.3
568,358 + A4249_RS02655 0.59 +0.3
568,359 - A4249_RS02655 0.59 +1.9
568,359 - A4249_RS02655 0.59 -0.9
568,359 - A4249_RS02655 0.59 -0.1
568,359 - A4249_RS02655 0.59 -1.3
568,359 - A4249_RS02655 0.59 -0.7
568,359 - A4249_RS02655 0.59 -0.6
568,359 - A4249_RS02655 0.59 +0.6
568,359 - A4249_RS02655 0.59 -2.2
568,359 - A4249_RS02655 0.59 +0.5
568,359 - A4249_RS02655 0.59 +0.5
568,359 - A4249_RS02655 0.59 +1.5
568,407 + A4249_RS02655 0.65 +0.1
568,407 + A4249_RS02655 0.65 -0.6
568,407 + A4249_RS02655 0.65 -0.4
568,407 + A4249_RS02655 0.65 +0.2
568,408 - A4249_RS02655 0.65 +0.3
568,409 + A4249_RS02655 0.65 +1.2
568,410 - A4249_RS02655 0.66 +0.4
568,410 - A4249_RS02655 0.66 -0.2
568,469 + A4249_RS02655 0.73 -1.0
568,469 + A4249_RS02655 0.73 +0.2
568,469 + A4249_RS02655 0.73 -0.3
568,470 - A4249_RS02655 0.73 -2.4
568,470 - A4249_RS02655 0.73 +0.5
568,470 - A4249_RS02655 0.73 -0.6
568,470 - A4249_RS02655 0.73 -0.5
568,496 + A4249_RS02655 0.76 -1.1
568,496 + A4249_RS02655 0.76 -0.3
568,496 + A4249_RS02655 0.76 +0.7
568,496 + A4249_RS02655 0.76 -0.2
568,497 - A4249_RS02655 0.77 +0.2
568,497 - A4249_RS02655 0.77 +0.3
568,497 - A4249_RS02655 0.77 +0.2
568,497 - A4249_RS02655 0.77 -0.6
568,526 + A4249_RS02655 0.80 +1.4
568,526 + A4249_RS02655 0.80 +0.1
568,526 + A4249_RS02655 0.80 -0.5
568,526 + A4249_RS02655 0.80 -0.7
568,527 - A4249_RS02655 0.80 -0.2
568,527 - A4249_RS02655 0.80 +0.3
568,692 + -0.1
568,693 - -0.2
568,783 + +0.6
568,784 - +0.2
568,784 - +0.4
568,784 - -0.0
568,784 - +0.6
568,873 + -0.5
568,873 + +0.5
568,873 + -0.4
568,873 + -0.9
568,873 + +0.2
568,873 + +0.1
568,873 + -0.9
568,873 + +0.8
568,945 + A4249_RS02660 0.16 +0.2
568,945 + A4249_RS02660 0.16 -0.3
568,945 + A4249_RS02660 0.16 -0.5
568,945 + A4249_RS02660 0.16 +1.5
568,945 + A4249_RS02660 0.16 +0.3
568,946 - A4249_RS02660 0.17 +0.8
568,946 - A4249_RS02660 0.17 +0.1
568,946 - A4249_RS02660 0.17 -0.0
568,946 - A4249_RS02660 0.17 -0.8
568,946 - A4249_RS02660 0.17 +0.2
568,946 - A4249_RS02660 0.17 -0.1
568,946 - A4249_RS02660 0.17 -1.8
568,946 - A4249_RS02660 0.17 -0.1
568,946 - A4249_RS02660 0.17 -0.2
568,946 - A4249_RS02660 0.17 +0.4
568,946 - A4249_RS02660 0.17 -1.1
568,946 - A4249_RS02660 0.17 -1.4
569,031 + A4249_RS02660 0.25 +0.6
569,248 + A4249_RS02660 0.47 -0.3
569,248 + A4249_RS02660 0.47 -0.3
569,248 + A4249_RS02660 0.47 -1.8
569,249 - A4249_RS02660 0.47 -0.2
569,249 - A4249_RS02660 0.47 +0.9
569,249 - A4249_RS02660 0.47 +0.3
569,298 + A4249_RS02660 0.52 +1.0
569,298 + A4249_RS02660 0.52 +0.2
569,298 + A4249_RS02660 0.52 +0.3
569,298 + A4249_RS02660 0.52 +0.1
569,298 + A4249_RS02660 0.52 +0.4
569,298 + A4249_RS02660 0.52 +1.6
569,299 - A4249_RS02660 0.52 -0.4
569,299 - A4249_RS02660 0.52 +0.0
569,299 - A4249_RS02660 0.52 +0.9
569,299 - A4249_RS02660 0.52 +0.4
569,347 + A4249_RS02660 0.57 +0.1
569,348 - A4249_RS02660 0.57 +0.1
569,348 - A4249_RS02660 0.57 +0.5
569,424 + A4249_RS02660 0.65 -0.7
569,424 + A4249_RS02660 0.65 +0.1
569,424 + A4249_RS02660 0.65 -0.1
569,425 - A4249_RS02660 0.65 +0.3
569,425 - A4249_RS02660 0.65 +1.1
569,431 + A4249_RS02660 0.66 -1.1
569,431 + A4249_RS02660 0.66 -0.1
569,431 + A4249_RS02660 0.66 +0.5
569,431 + A4249_RS02660 0.66 -0.1
569,431 + A4249_RS02660 0.66 +0.2
569,431 + A4249_RS02660 0.66 +0.1
569,432 - A4249_RS02660 0.66 +0.1
569,432 - A4249_RS02660 0.66 -0.7
569,432 - A4249_RS02660 0.66 +1.2
569,432 - A4249_RS02660 0.66 -1.3
569,432 - A4249_RS02660 0.66 -1.6
569,432 - A4249_RS02660 0.66 +1.4
569,432 - A4249_RS02660 0.66 -1.4

Or see this region's nucleotide sequence