Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02675 and ABI39_RS02680 are separated by 217 nucleotides ABI39_RS02680 and ABI39_RS02685 are separated by 144 nucleotides
ABI39_RS02675: ABI39_RS02675 - response regulator, at 774,075 to 778,109
_RS02675
ABI39_RS02680: ABI39_RS02680 - DUF3810 domain-containing protein, at 778,327 to 779,367
_RS02680
ABI39_RS02685: ABI39_RS02685 - DUF2264 domain-containing protein, at 779,512 to 781,827
_RS02685
Position (kb) 778
779
780 Strain fitness (log2 ratio) -1
0
1 at 777.424 kb on + strand, within ABI39_RS02675 at 777.542 kb on - strand, within ABI39_RS02675 at 777.601 kb on + strand, within ABI39_RS02675 at 777.601 kb on + strand, within ABI39_RS02675 at 777.647 kb on + strand, within ABI39_RS02675 at 777.924 kb on - strand at 777.995 kb on + strand at 777.996 kb on - strand at 778.069 kb on - strand at 778.161 kb on + strand at 778.244 kb on - strand at 778.247 kb on - strand at 778.283 kb on + strand at 778.452 kb on + strand, within ABI39_RS02680 at 778.452 kb on + strand, within ABI39_RS02680 at 778.454 kb on + strand, within ABI39_RS02680 at 778.469 kb on + strand, within ABI39_RS02680 at 778.470 kb on - strand, within ABI39_RS02680 at 778.473 kb on + strand, within ABI39_RS02680 at 778.482 kb on - strand, within ABI39_RS02680 at 778.602 kb on - strand, within ABI39_RS02680 at 778.668 kb on + strand, within ABI39_RS02680 at 778.703 kb on + strand, within ABI39_RS02680 at 778.708 kb on - strand, within ABI39_RS02680 at 778.861 kb on - strand, within ABI39_RS02680 at 778.950 kb on + strand, within ABI39_RS02680 at 778.951 kb on - strand, within ABI39_RS02680 at 778.959 kb on - strand, within ABI39_RS02680 at 779.076 kb on - strand, within ABI39_RS02680 at 779.221 kb on + strand, within ABI39_RS02680 at 779.221 kb on + strand, within ABI39_RS02680 at 779.253 kb on - strand, within ABI39_RS02680 at 779.329 kb on + strand at 779.333 kb on - strand at 779.333 kb on - strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.334 kb on + strand at 779.458 kb on + strand at 779.536 kb on - strand at 779.732 kb on - strand at 779.732 kb on - strand at 779.875 kb on - strand, within ABI39_RS02685 at 779.920 kb on - strand, within ABI39_RS02685 at 780.079 kb on - strand, within ABI39_RS02685 at 780.301 kb on - strand, within ABI39_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/ml (C) remove 777,424 + ABI39_RS02675 0.83 +0.3 777,542 - ABI39_RS02675 0.86 -0.8 777,601 + ABI39_RS02675 0.87 +0.3 777,601 + ABI39_RS02675 0.87 -0.0 777,647 + ABI39_RS02675 0.89 +0.8 777,924 - +0.0 777,995 + +0.1 777,996 - +0.6 778,069 - +0.0 778,161 + -0.1 778,244 - +0.5 778,247 - -0.2 778,283 + -0.7 778,452 + ABI39_RS02680 0.12 -0.6 778,452 + ABI39_RS02680 0.12 -0.1 778,454 + ABI39_RS02680 0.12 -0.6 778,469 + ABI39_RS02680 0.14 -0.5 778,470 - ABI39_RS02680 0.14 -0.1 778,473 + ABI39_RS02680 0.14 -0.5 778,482 - ABI39_RS02680 0.15 -0.3 778,602 - ABI39_RS02680 0.26 -0.3 778,668 + ABI39_RS02680 0.33 -0.3 778,703 + ABI39_RS02680 0.36 -0.1 778,708 - ABI39_RS02680 0.37 +0.2 778,861 - ABI39_RS02680 0.51 -0.7 778,950 + ABI39_RS02680 0.60 -0.3 778,951 - ABI39_RS02680 0.60 -0.7 778,959 - ABI39_RS02680 0.61 -0.2 779,076 - ABI39_RS02680 0.72 -0.7 779,221 + ABI39_RS02680 0.86 -0.5 779,221 + ABI39_RS02680 0.86 +0.5 779,253 - ABI39_RS02680 0.89 +0.4 779,329 + -0.2 779,333 - +0.5 779,333 - +1.5 779,334 + -0.0 779,334 + +0.4 779,334 + -0.5 779,334 + -1.2 779,458 + +0.3 779,536 - -0.4 779,732 - +0.3 779,732 - +0.2 779,875 - ABI39_RS02685 0.16 +0.1 779,920 - ABI39_RS02685 0.18 -1.0 780,079 - ABI39_RS02685 0.24 +0.6 780,301 - ABI39_RS02685 0.34 +0.2
Or see this region's nucleotide sequence