Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09170

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
2,469,503	+		ABI39_RS09165	0.54	-0.4
2,469,531	-		ABI39_RS09165	0.55	+0.3
2,469,539	+		ABI39_RS09165	0.56	-0.0
2,469,623	+		ABI39_RS09165	0.61	-1.2
2,469,648	-		ABI39_RS09165	0.62	-0.7
2,469,651	+		ABI39_RS09165	0.62	+0.1
2,469,651	+		ABI39_RS09165	0.62	-0.9
2,469,791	+		ABI39_RS09165	0.70	+0.7
2,469,820	-		ABI39_RS09165	0.72	-0.9
2,469,831	+		ABI39_RS09165	0.73	+0.2
2,469,832	-		ABI39_RS09165	0.73	+0.0
2,469,900	-		ABI39_RS09165	0.77	-0.0
2,469,915	+		ABI39_RS09165	0.78	-1.2
2,469,957	+		ABI39_RS09165	0.80	-0.3
2,470,215	+				+0.3
2,470,215	+				-1.1
2,470,216	-				-0.7
2,470,300	-				+0.1
2,470,319	+				-0.0
2,470,320	-				-0.6
2,470,404	+				+0.0
2,470,477	+				+0.5
2,470,478	-				-0.1
2,470,478	-				-0.7
2,470,479	+				+1.0
2,470,519	+				+0.0
2,470,560	-				-1.1
2,470,610	+				-0.0
2,470,634	+				-0.2
2,470,645	+				-0.1
2,470,701	+				-1.2
2,470,731	-				+0.4
2,470,772	+				-1.3
2,470,987	+		ABI39_RS09170	0.11	-0.2
2,470,987	+		ABI39_RS09170	0.11	-1.3
2,470,987	+		ABI39_RS09170	0.11	-0.3
2,470,995	-		ABI39_RS09170	0.11	+0.1
2,471,050	-		ABI39_RS09170	0.13	-1.5
2,471,225	-		ABI39_RS09170	0.17	-0.6
2,471,306	-		ABI39_RS09170	0.18	-0.8
2,471,378	+		ABI39_RS09170	0.20	+0.1
2,471,379	-		ABI39_RS09170	0.20	-0.8
2,471,386	-		ABI39_RS09170	0.20	-0.1
2,471,390	+		ABI39_RS09170	0.20	+0.6
2,471,666	-		ABI39_RS09170	0.27	-1.6
2,471,674	-		ABI39_RS09170	0.27	-0.5
2,471,724	-		ABI39_RS09170	0.28	-1.0
2,471,724	-		ABI39_RS09170	0.28	-1.1
2,471,724	-		ABI39_RS09170	0.28	-0.0
2,471,759	+		ABI39_RS09170	0.29	-1.7
2,471,760	-		ABI39_RS09170	0.29	-0.8
2,471,857	+		ABI39_RS09170	0.31	-0.9
2,472,014	+		ABI39_RS09170	0.34	-0.5
2,472,066	-		ABI39_RS09170	0.36	-0.4
2,472,135	+		ABI39_RS09170	0.37	-0.5
2,472,136	-		ABI39_RS09170	0.37	-0.7
2,472,150	-		ABI39_RS09170	0.38	-0.3
2,472,150	-		ABI39_RS09170	0.38	-1.1
2,472,222	+		ABI39_RS09170	0.39	-0.4
2,472,223	-		ABI39_RS09170	0.39	+0.2
2,472,225	-		ABI39_RS09170	0.39	-0.9
2,472,261	-		ABI39_RS09170	0.40	-0.1
2,472,341	+		ABI39_RS09170	0.42	+0.4
2,472,343	+		ABI39_RS09170	0.42	-1.0
2,472,343	+		ABI39_RS09170	0.42	-1.5
2,472,377	+		ABI39_RS09170	0.43	-0.7
2,472,466	+		ABI39_RS09170	0.45	-1.7
2,472,467	-		ABI39_RS09170	0.45	-0.4
2,472,501	+		ABI39_RS09170	0.46	-0.9
2,472,570	-		ABI39_RS09170	0.47	-0.1
2,472,705	+		ABI39_RS09170	0.50	-0.6
2,472,706	-		ABI39_RS09170	0.50	-0.5
2,472,728	+		ABI39_RS09170	0.51	-0.3
2,472,836	+		ABI39_RS09170	0.53	+0.1
2,472,836	+		ABI39_RS09170	0.53	-1.6
2,472,837	-		ABI39_RS09170	0.53	-1.5
2,472,859	+		ABI39_RS09170	0.54	-0.2
2,473,089	+		ABI39_RS09170	0.59	-1.7
2,473,089	+		ABI39_RS09170	0.59	-0.2
2,473,091	+		ABI39_RS09170	0.59	-0.5
2,473,094	+		ABI39_RS09170	0.59	+0.2
2,473,227	+		ABI39_RS09170	0.62	-0.9
2,473,266	+		ABI39_RS09170	0.63	-1.1
2,473,266	+		ABI39_RS09170	0.63	-0.4
2,473,267	-		ABI39_RS09170	0.63	-1.7
2,473,268	+		ABI39_RS09170	0.63	-2.0
2,473,269	-		ABI39_RS09170	0.63	-0.9
2,473,439	-		ABI39_RS09170	0.67	-0.6
2,473,457	-		ABI39_RS09170	0.67	-0.3
2,473,544	+		ABI39_RS09170	0.69	-0.4
2,473,804	+		ABI39_RS09170	0.75	-1.4
2,473,804	+		ABI39_RS09170	0.75	-0.4
2,474,253	-		ABI39_RS09170	0.85	+0.0
2,474,253	-		ABI39_RS09170	0.85	-2.0
2,474,289	-		ABI39_RS09170	0.86	-2.1
2,474,291	+		ABI39_RS09170	0.86	-0.4
2,474,312	+		ABI39_RS09170	0.87	+0.4
2,474,408	+		ABI39_RS09170	0.89	-0.1
2,474,434	-		ABI39_RS09170	0.89	-0.6
2,474,434	-		ABI39_RS09170	0.89	-0.6
2,474,511	-				-0.1
2,474,511	-				-1.3
2,474,774	+				-0.2
2,474,774	+				-3.1
2,474,774	+				-0.5
2,474,775	-				-1.1
2,474,778	-				-0.7
2,474,794	-				+0.3
2,474,865	+				+0.9
2,474,889	-				-2.1
2,474,949	+				+0.5
2,475,008	-				-0.7
2,475,169	-		ABI39_RS09175	0.10	-0.3
2,475,219	+		ABI39_RS09175	0.17	-1.7
2,475,220	-		ABI39_RS09175	0.17	+1.5
2,475,312	+		ABI39_RS09175	0.30	+0.6
2,475,318	-		ABI39_RS09175	0.30	+0.7
2,475,343	-		ABI39_RS09175	0.34	-0.1
2,475,360	-		ABI39_RS09175	0.36	+0.6
2,475,500	-		ABI39_RS09175	0.55	-0.6
2,475,503	+		ABI39_RS09175	0.56	+0.6
2,475,554	-		ABI39_RS09175	0.63	+0.3
2,475,560	+		ABI39_RS09175	0.63	-1.0
2,475,561	-		ABI39_RS09175	0.64	+0.3
2,475,561	-		ABI39_RS09175	0.64	+0.1
2,475,561	-		ABI39_RS09175	0.64	+0.5
2,475,624	+		ABI39_RS09175	0.72	-0.1
2,475,757	+				-0.1