Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03015 and ABI39_RS03020 are separated by 167 nucleotides ABI39_RS03020 and ABI39_RS03025 are separated by 11 nucleotides
ABI39_RS03015: ABI39_RS03015 - right-handed parallel beta-helix repeat-containing protein, at 875,704 to 877,218
_RS03015
ABI39_RS03020: ABI39_RS03020 - RagB/SusD family nutrient uptake outer membrane protein, at 877,386 to 879,005
_RS03020
ABI39_RS03025: ABI39_RS03025 - TonB-dependent receptor, at 879,017 to 882,088
_RS03025
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -1
0
1
2 at 876.464 kb on - strand, within ABI39_RS03015 at 876.470 kb on + strand, within ABI39_RS03015 at 876.483 kb on + strand, within ABI39_RS03015 at 876.503 kb on - strand, within ABI39_RS03015 at 876.615 kb on + strand, within ABI39_RS03015 at 876.627 kb on + strand, within ABI39_RS03015 at 876.721 kb on + strand, within ABI39_RS03015 at 876.799 kb on + strand, within ABI39_RS03015 at 876.869 kb on - strand, within ABI39_RS03015 at 876.882 kb on + strand, within ABI39_RS03015 at 876.899 kb on + strand, within ABI39_RS03015 at 876.909 kb on + strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.959 kb on - strand, within ABI39_RS03015 at 876.963 kb on - strand, within ABI39_RS03015 at 876.981 kb on + strand, within ABI39_RS03015 at 877.113 kb on + strand at 877.116 kb on + strand at 877.119 kb on + strand at 877.145 kb on + strand at 877.149 kb on - strand at 877.149 kb on - strand at 877.245 kb on + strand at 877.424 kb on + strand at 877.501 kb on + strand at 877.523 kb on + strand at 877.527 kb on - strand at 877.719 kb on + strand, within ABI39_RS03020 at 877.727 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.798 kb on + strand, within ABI39_RS03020 at 877.853 kb on + strand, within ABI39_RS03020 at 877.855 kb on + strand, within ABI39_RS03020 at 877.861 kb on + strand, within ABI39_RS03020 at 877.863 kb on + strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.864 kb on - strand, within ABI39_RS03020 at 877.895 kb on - strand, within ABI39_RS03020 at 877.897 kb on - strand, within ABI39_RS03020 at 877.926 kb on - strand, within ABI39_RS03020 at 877.930 kb on - strand, within ABI39_RS03020 at 878.115 kb on + strand, within ABI39_RS03020 at 878.295 kb on - strand, within ABI39_RS03020 at 878.296 kb on + strand, within ABI39_RS03020 at 878.297 kb on - strand, within ABI39_RS03020 at 878.436 kb on - strand, within ABI39_RS03020 at 878.450 kb on + strand, within ABI39_RS03020 at 878.639 kb on + strand, within ABI39_RS03020 at 878.688 kb on - strand, within ABI39_RS03020 at 878.774 kb on + strand, within ABI39_RS03020 at 878.775 kb on - strand, within ABI39_RS03020 at 878.775 kb on - strand, within ABI39_RS03020 at 878.783 kb on + strand, within ABI39_RS03020 at 878.785 kb on + strand, within ABI39_RS03020 at 878.786 kb on - strand, within ABI39_RS03020 at 878.787 kb on + strand, within ABI39_RS03020 at 878.788 kb on - strand, within ABI39_RS03020 at 878.982 kb on + strand at 879.005 kb on + strand at 879.151 kb on - strand at 879.275 kb on - strand at 879.278 kb on - strand at 879.281 kb on - strand at 879.398 kb on + strand, within ABI39_RS03025 at 879.445 kb on - strand, within ABI39_RS03025 at 879.536 kb on + strand, within ABI39_RS03025 at 879.538 kb on + strand, within ABI39_RS03025 at 879.539 kb on - strand, within ABI39_RS03025 at 879.609 kb on - strand, within ABI39_RS03025 at 879.703 kb on + strand, within ABI39_RS03025 at 879.708 kb on - strand, within ABI39_RS03025 at 879.710 kb on - strand, within ABI39_RS03025 at 879.994 kb on + strand, within ABI39_RS03025
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) remove 876,464 - ABI39_RS03015 0.50 -0.5 876,470 + ABI39_RS03015 0.51 +0.1 876,483 + ABI39_RS03015 0.51 +0.8 876,503 - ABI39_RS03015 0.53 -0.0 876,615 + ABI39_RS03015 0.60 -0.7 876,627 + ABI39_RS03015 0.61 -0.4 876,721 + ABI39_RS03015 0.67 +0.1 876,799 + ABI39_RS03015 0.72 +0.3 876,869 - ABI39_RS03015 0.77 +0.5 876,882 + ABI39_RS03015 0.78 -0.3 876,899 + ABI39_RS03015 0.79 -0.3 876,909 + ABI39_RS03015 0.80 +0.3 876,959 - ABI39_RS03015 0.83 +1.8 876,959 - ABI39_RS03015 0.83 +0.4 876,963 - ABI39_RS03015 0.83 -0.2 876,981 + ABI39_RS03015 0.84 -1.2 877,113 + -0.6 877,116 + +0.1 877,119 + -0.7 877,145 + -1.2 877,149 - +0.6 877,149 - -0.2 877,245 + -0.7 877,424 + +0.6 877,501 + -0.2 877,523 + +0.8 877,527 - -0.9 877,719 + ABI39_RS03020 0.21 -1.7 877,727 + ABI39_RS03020 0.21 +0.8 877,798 + ABI39_RS03020 0.25 -0.1 877,798 + ABI39_RS03020 0.25 -1.3 877,853 + ABI39_RS03020 0.29 +0.3 877,855 + ABI39_RS03020 0.29 -0.1 877,861 + ABI39_RS03020 0.29 +0.1 877,863 + ABI39_RS03020 0.29 +0.3 877,864 - ABI39_RS03020 0.30 +0.0 877,864 - ABI39_RS03020 0.30 +0.2 877,864 - ABI39_RS03020 0.30 +0.0 877,895 - ABI39_RS03020 0.31 -0.6 877,897 - ABI39_RS03020 0.32 +0.1 877,926 - ABI39_RS03020 0.33 +0.2 877,930 - ABI39_RS03020 0.34 -0.2 878,115 + ABI39_RS03020 0.45 -0.8 878,295 - ABI39_RS03020 0.56 +0.5 878,296 + ABI39_RS03020 0.56 -0.8 878,297 - ABI39_RS03020 0.56 +0.3 878,436 - ABI39_RS03020 0.65 -0.5 878,450 + ABI39_RS03020 0.66 -0.1 878,639 + ABI39_RS03020 0.77 -0.2 878,688 - ABI39_RS03020 0.80 -0.5 878,774 + ABI39_RS03020 0.86 -0.3 878,775 - ABI39_RS03020 0.86 +0.5 878,775 - ABI39_RS03020 0.86 -0.3 878,783 + ABI39_RS03020 0.86 -0.0 878,785 + ABI39_RS03020 0.86 -0.8 878,786 - ABI39_RS03020 0.86 -0.4 878,787 + ABI39_RS03020 0.86 -0.4 878,788 - ABI39_RS03020 0.87 +0.1 878,982 + -0.1 879,005 + -0.5 879,151 - +0.1 879,275 - -0.4 879,278 - +0.2 879,281 - -0.2 879,398 + ABI39_RS03025 0.12 -0.3 879,445 - ABI39_RS03025 0.14 +0.4 879,536 + ABI39_RS03025 0.17 -0.6 879,538 + ABI39_RS03025 0.17 +0.5 879,539 - ABI39_RS03025 0.17 -0.3 879,609 - ABI39_RS03025 0.19 +1.1 879,703 + ABI39_RS03025 0.22 -0.2 879,708 - ABI39_RS03025 0.22 +0.7 879,710 - ABI39_RS03025 0.23 +0.8 879,994 + ABI39_RS03025 0.32 +0.3
Or see this region's nucleotide sequence