Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22175

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS14055 and ABI39_RS14060 are separated by 100 nucleotidesABI39_RS14060 and ABI39_RS22175 are separated by 170 nucleotidesABI39_RS22175 and ABI39_RS22800 overlap by 1 nucleotidesABI39_RS22800 and ABI39_RS14070 are separated by 142 nucleotides ABI39_RS14055: ABI39_RS14055 - site-specific DNA-methyltransferase, at 3,657,632 to 3,658,858 _RS14055 ABI39_RS14060: ABI39_RS14060 - hypothetical protein, at 3,658,959 to 3,659,273 _RS14060 ABI39_RS22175: ABI39_RS22175 - N-acetylmuramoyl-L-alanine amidase, at 3,659,444 to 3,659,860 _RS22175 ABI39_RS22800: ABI39_RS22800 - smalltalk protein, at 3,659,860 to 3,659,964 _RS22800 ABI39_RS14070: ABI39_RS14070 - DNA-binding protein, at 3,660,107 to 3,660,598 _RS14070 Position (kb) 3659 3660Strain fitness (log2 ratio) -1 0 1at 3658.859 kb on + strandat 3658.885 kb on + strandat 3659.128 kb on - strand, within ABI39_RS14060at 3659.370 kb on - strandat 3659.375 kb on - strandat 3659.631 kb on + strand, within ABI39_RS22175at 3659.834 kb on - strandat 3659.834 kb on - strandat 3659.993 kb on - strandat 3660.336 kb on - strand, within ABI39_RS14070at 3660.661 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
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3,658,859 + -0.2
3,658,885 + +0.2
3,659,128 - ABI39_RS14060 0.54 +1.2
3,659,370 - +0.4
3,659,375 - +0.7
3,659,631 + ABI39_RS22175 0.45 -1.2
3,659,834 - +0.8
3,659,834 - +0.8
3,659,993 - +0.0
3,660,336 - ABI39_RS14070 0.47 -0.6
3,660,661 + +0.1

Or see this region's nucleotide sequence