Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS14055 and ABI39_RS14060 are separated by 100 nucleotides ABI39_RS14060 and ABI39_RS22175 are separated by 170 nucleotides ABI39_RS22175 and ABI39_RS22800 overlap by 1 nucleotides ABI39_RS22800 and ABI39_RS14070 are separated by 142 nucleotides
ABI39_RS14055: ABI39_RS14055 - site-specific DNA-methyltransferase, at 3,657,632 to 3,658,858
_RS14055
ABI39_RS14060: ABI39_RS14060 - hypothetical protein, at 3,658,959 to 3,659,273
_RS14060
ABI39_RS22175: ABI39_RS22175 - N-acetylmuramoyl-L-alanine amidase, at 3,659,444 to 3,659,860
_RS22175
ABI39_RS22800: ABI39_RS22800 - smalltalk protein, at 3,659,860 to 3,659,964
_RS22800
ABI39_RS14070: ABI39_RS14070 - DNA-binding protein, at 3,660,107 to 3,660,598
_RS14070
Position (kb)
3659
3660 Strain fitness (log2 ratio)
-1
0
1 at 3658.859 kb on + strand at 3658.885 kb on + strand at 3659.128 kb on - strand, within ABI39_RS14060 at 3659.370 kb on - strand at 3659.375 kb on - strand at 3659.631 kb on + strand, within ABI39_RS22175 at 3659.834 kb on - strand at 3659.834 kb on - strand at 3659.993 kb on - strand at 3660.336 kb on - strand, within ABI39_RS14070 at 3660.661 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) remove 3,658,859 + -0.2 3,658,885 + +0.2 3,659,128 - ABI39_RS14060 0.54 +1.2 3,659,370 - +0.4 3,659,375 - +0.7 3,659,631 + ABI39_RS22175 0.45 -1.2 3,659,834 - +0.8 3,659,834 - +0.8 3,659,993 - +0.0 3,660,336 - ABI39_RS14070 0.47 -0.6 3,660,661 + +0.1
Or see this region's nucleotide sequence