Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20090

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
4,962,639	-		ABI39_RS20080	0.48	-1.9
4,962,645	-		ABI39_RS20080	0.49	-0.7
4,962,783	+		ABI39_RS20080	0.72	+0.1
4,962,783	+		ABI39_RS20080	0.72	-2.4
4,962,783	+		ABI39_RS20080	0.72	-1.3
4,962,784	-		ABI39_RS20080	0.72	-1.5
4,962,918	-				-3.8
4,962,920	-				-1.8
4,962,969	+				-1.4
4,963,101	-		ABI39_RS20085	0.23	-1.1
4,963,229	-		ABI39_RS20085	0.45	-1.4
4,963,239	-		ABI39_RS20085	0.46	-1.7
4,963,287	+		ABI39_RS20085	0.55	-1.4
4,963,287	+		ABI39_RS20085	0.55	-0.9
4,963,316	+		ABI39_RS20085	0.59	-2.1
4,963,399	+		ABI39_RS20085	0.74	-0.9
4,963,474	+		ABI39_RS20085	0.86	-2.0
4,963,497	-				-1.7
4,963,692	+		ABI39_RS20090	0.16	-1.8
4,963,802	+		ABI39_RS20090	0.30	-2.6
4,963,803	-		ABI39_RS20090	0.30	-1.1
4,963,803	-		ABI39_RS20090	0.30	+0.1
4,963,845	+		ABI39_RS20090	0.35	-2.3
4,963,855	-		ABI39_RS20090	0.36	+0.3
4,964,012	+		ABI39_RS20090	0.56	-0.7
4,964,013	-		ABI39_RS20090	0.56	-0.1
4,964,022	+		ABI39_RS20090	0.57	-2.7
4,964,089	+		ABI39_RS20090	0.66	+0.2
4,964,103	+		ABI39_RS20090	0.68	-1.4
4,964,128	-		ABI39_RS20090	0.71	-2.7
4,964,137	-		ABI39_RS20090	0.72	-1.4
4,964,142	+		ABI39_RS20090	0.73	-1.9
4,964,142	+		ABI39_RS20090	0.73	-1.7
4,964,142	+		ABI39_RS20090	0.73	-1.8
4,964,384	+				-2.7
4,964,395	+				-1.7
4,964,433	+				-1.4
4,964,434	-				-1.7
4,964,447	+				-1.9
4,964,512	-		ABI39_RS20095	0.16	-2.7
4,964,513	+		ABI39_RS20095	0.16	-2.4
4,964,514	-		ABI39_RS20095	0.16	+0.5
4,964,519	+		ABI39_RS20095	0.17	-2.1
4,964,520	-		ABI39_RS20095	0.17	-2.7
4,964,520	-		ABI39_RS20095	0.17	-2.1
4,964,544	-		ABI39_RS20095	0.19	-1.7
4,964,655	+		ABI39_RS20095	0.30	-3.6
4,964,679	+		ABI39_RS20095	0.33	-2.0
4,964,687	+		ABI39_RS20095	0.34	-2.1
4,964,717	+		ABI39_RS20095	0.37	-3.6
4,964,717	+		ABI39_RS20095	0.37	-1.1
4,964,717	+		ABI39_RS20095	0.37	-1.1
4,964,718	-		ABI39_RS20095	0.37	-0.8
4,964,793	+		ABI39_RS20095	0.44	-1.8
4,964,793	+		ABI39_RS20095	0.44	-0.5
4,964,794	-		ABI39_RS20095	0.44	-2.6
4,964,794	-		ABI39_RS20095	0.44	-1.6
4,964,824	-		ABI39_RS20095	0.47	-2.4
4,964,888	-		ABI39_RS20095	0.54	-2.7
4,964,985	-		ABI39_RS20095	0.64	-2.4
4,965,174	+		ABI39_RS20095	0.83	-2.6
4,965,174	+		ABI39_RS20095	0.83	-2.1
4,965,274	+				-2.8
4,965,275	-				-2.6
4,965,275	-				-0.1
4,965,275	-				-1.3
4,965,279	-				-1.7
4,965,324	+				+0.2
4,965,330	+				-0.5
4,965,336	-				-2.6