Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20080

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
4,961,373	+				-1.1
4,961,462	+		ABI39_RS20075	0.17	-1.4
4,961,512	-		ABI39_RS20075	0.23	+0.1
4,961,558	+		ABI39_RS20075	0.28	-0.2
4,961,570	+		ABI39_RS20075	0.29	-1.0
4,961,613	-		ABI39_RS20075	0.34	-0.9
4,961,687	-		ABI39_RS20075	0.42	-0.3
4,961,775	-		ABI39_RS20075	0.52	-1.1
4,961,812	+		ABI39_RS20075	0.56	-0.1
4,961,812	+		ABI39_RS20075	0.56	-1.1
4,961,812	+		ABI39_RS20075	0.56	-2.1
4,961,812	+		ABI39_RS20075	0.56	+0.9
4,961,814	+		ABI39_RS20075	0.56	-2.4
4,961,980	+		ABI39_RS20075	0.75	-0.8
4,961,980	+		ABI39_RS20075	0.75	-1.9
4,961,981	-		ABI39_RS20075	0.75	+0.4
4,961,991	+		ABI39_RS20075	0.76	-1.9
4,962,004	+		ABI39_RS20075	0.77	-0.8
4,962,069	-		ABI39_RS20075	0.85	-0.2
4,962,072	-		ABI39_RS20075	0.85	-0.1
4,962,072	-		ABI39_RS20075	0.85	+0.4
4,962,095	-		ABI39_RS20075	0.88	+0.8
4,962,096	+		ABI39_RS20075	0.88	-0.8
4,962,097	-		ABI39_RS20075	0.88	-0.6
4,962,108	+		ABI39_RS20075	0.89	+0.7
4,962,132	+				-1.3
4,962,256	+				+1.3
4,962,428	-		ABI39_RS20080	0.13	-3.3
4,962,465	-		ABI39_RS20080	0.20	-1.7
4,962,465	-		ABI39_RS20080	0.20	-1.4
4,962,479	+		ABI39_RS20080	0.22	-2.1
4,962,639	-		ABI39_RS20080	0.48	-1.9
4,962,645	-		ABI39_RS20080	0.49	-0.7
4,962,783	+		ABI39_RS20080	0.72	+0.1
4,962,783	+		ABI39_RS20080	0.72	-2.4
4,962,783	+		ABI39_RS20080	0.72	-1.3
4,962,784	-		ABI39_RS20080	0.72	-1.5
4,962,918	-				-3.8
4,962,920	-				-1.8
4,962,969	+				-1.4
4,963,101	-		ABI39_RS20085	0.23	-1.1
4,963,229	-		ABI39_RS20085	0.45	-1.4
4,963,239	-		ABI39_RS20085	0.46	-1.7
4,963,287	+		ABI39_RS20085	0.55	-1.4
4,963,287	+		ABI39_RS20085	0.55	-0.9
4,963,316	+		ABI39_RS20085	0.59	-2.1
4,963,399	+		ABI39_RS20085	0.74	-0.9
4,963,474	+		ABI39_RS20085	0.86	-2.0
4,963,497	-				-1.7
4,963,692	+		ABI39_RS20090	0.16	-1.8
4,963,802	+		ABI39_RS20090	0.30	-2.6
4,963,803	-		ABI39_RS20090	0.30	-1.1
4,963,803	-		ABI39_RS20090	0.30	+0.1
4,963,845	+		ABI39_RS20090	0.35	-2.3
4,963,855	-		ABI39_RS20090	0.36	+0.3