Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20070

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
4,959,252	-		ABI39_RS20065	0.63	+1.1
4,959,288	+		ABI39_RS20065	0.65	-0.4
4,959,288	+		ABI39_RS20065	0.65	+0.4
4,959,347	-		ABI39_RS20065	0.68	-0.7
4,959,347	-		ABI39_RS20065	0.68	+1.0
4,959,354	+		ABI39_RS20065	0.68	+0.1
4,959,355	-		ABI39_RS20065	0.68	+0.1
4,959,364	+		ABI39_RS20065	0.69	+0.1
4,959,364	+		ABI39_RS20065	0.69	+0.2
4,959,397	+		ABI39_RS20065	0.70	+1.3
4,959,398	-		ABI39_RS20065	0.71	+0.5
4,959,457	+		ABI39_RS20065	0.74	+0.5
4,959,533	+		ABI39_RS20065	0.78	-0.2
4,959,700	+		ABI39_RS20065	0.87	-0.8
4,959,795	+				-1.1
4,959,795	+				+1.0
4,959,796	-				+0.4
4,959,805	-				+0.4
4,959,880	+				+0.1
4,959,880	+				-0.0
4,959,880	+				-0.1
4,959,880	+				+0.3
4,959,881	-				-0.3
4,959,881	-				+0.6
4,959,883	-				+0.7
4,959,883	-				+0.4
4,959,883	-				-0.5
4,959,883	-				+0.6
4,959,891	+				+0.4
4,959,892	-				+0.2
4,959,981	-				+1.0
4,960,129	-				+1.0
4,960,364	-		ABI39_RS20070	0.12	-1.9
4,960,375	-		ABI39_RS20070	0.13	-1.1
4,960,565	+		ABI39_RS20070	0.31	-2.7
4,960,565	+		ABI39_RS20070	0.31	-3.2
4,960,565	+		ABI39_RS20070	0.31	-0.5
4,960,566	-		ABI39_RS20070	0.31	-2.1
4,960,569	+		ABI39_RS20070	0.31	-1.1
4,960,569	+		ABI39_RS20070	0.31	-3.3
4,960,569	+		ABI39_RS20070	0.31	-2.1
4,960,570	-		ABI39_RS20070	0.32	-1.9
4,960,605	-		ABI39_RS20070	0.35	-2.1
4,960,749	+		ABI39_RS20070	0.49	-3.4
4,960,758	+		ABI39_RS20070	0.50	-2.7
4,960,783	-		ABI39_RS20070	0.52	-1.7
4,960,893	+		ABI39_RS20070	0.63	-1.2
4,960,939	+		ABI39_RS20070	0.67	-1.1
4,961,041	-		ABI39_RS20070	0.77	-2.1
4,961,140	+		ABI39_RS20070	0.87	-2.4
4,961,140	+		ABI39_RS20070	0.87	-1.2
4,961,141	-		ABI39_RS20070	0.87	-2.1
4,961,145	+		ABI39_RS20070	0.87	-1.9
4,961,145	+		ABI39_RS20070	0.87	-0.1
4,961,149	+		ABI39_RS20070	0.88	-3.3
4,961,149	+		ABI39_RS20070	0.88	-1.7
4,961,206	-				-1.3
4,961,218	+				-2.7
4,961,218	+				-1.7
4,961,277	+				-0.1
4,961,288	-				+0.6
4,961,329	+				-0.6
4,961,345	-				+0.8
4,961,373	+				-1.1
4,961,462	+		ABI39_RS20075	0.17	-1.4
4,961,512	-		ABI39_RS20075	0.23	+0.1
4,961,558	+		ABI39_RS20075	0.28	-0.2
4,961,570	+		ABI39_RS20075	0.29	-1.0
4,961,613	-		ABI39_RS20075	0.34	-0.9
4,961,687	-		ABI39_RS20075	0.42	-0.3
4,961,775	-		ABI39_RS20075	0.52	-1.1
4,961,812	+		ABI39_RS20075	0.56	-0.1
4,961,812	+		ABI39_RS20075	0.56	-1.1
4,961,812	+		ABI39_RS20075	0.56	-2.1
4,961,812	+		ABI39_RS20075	0.56	+0.9
4,961,814	+		ABI39_RS20075	0.56	-2.4
4,961,980	+		ABI39_RS20075	0.75	-0.8
4,961,980	+		ABI39_RS20075	0.75	-1.9
4,961,981	-		ABI39_RS20075	0.75	+0.4
4,961,991	+		ABI39_RS20075	0.76	-1.9
4,962,004	+		ABI39_RS20075	0.77	-0.8
4,962,069	-		ABI39_RS20075	0.85	-0.2
4,962,072	-		ABI39_RS20075	0.85	-0.1
4,962,072	-		ABI39_RS20075	0.85	+0.4
4,962,095	-		ABI39_RS20075	0.88	+0.8
4,962,096	+		ABI39_RS20075	0.88	-0.8
4,962,097	-		ABI39_RS20075	0.88	-0.6
4,962,108	+		ABI39_RS20075	0.89	+0.7
4,962,132	+				-1.3
4,962,256	+				+1.3