Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18745

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
4,723,406	-		ABI39_RS18740	0.19	-1.4
4,723,406	-		ABI39_RS18740	0.19	+0.3
4,723,474	+		ABI39_RS18740	0.25	+0.9
4,723,605	+		ABI39_RS18740	0.36	-0.6
4,723,606	-		ABI39_RS18740	0.36	-2.5
4,723,607	+		ABI39_RS18740	0.36	+1.4
4,723,842	+		ABI39_RS18740	0.56	+0.2
4,723,848	+		ABI39_RS18740	0.57	-0.3
4,724,003	-		ABI39_RS18740	0.70	-0.1
4,724,027	-		ABI39_RS18740	0.72	-0.1
4,724,105	+		ABI39_RS18740	0.78	-1.7
4,724,142	+		ABI39_RS18740	0.82	-2.0
4,724,142	+		ABI39_RS18740	0.82	+1.2
4,724,142	+		ABI39_RS18740	0.82	-0.1
4,724,171	+		ABI39_RS18740	0.84	-0.1
4,724,183	-		ABI39_RS18740	0.85	-1.7
4,724,187	+		ABI39_RS18740	0.85	+0.4
4,724,288	+				-1.1
4,724,357	+				-0.3
4,724,388	+				-2.6
4,724,455	+				-0.1
4,724,455	+				-0.1
4,724,456	-				-3.5
4,724,464	+				-2.5
4,724,464	+				-1.7
4,724,465	-				-1.1
4,724,526	+				-3.1
4,724,658	-				-1.1
4,724,884	+		ABI39_RS18745	0.14	-1.1
4,725,440	-		ABI39_RS18745	0.29	-2.5
4,725,452	+		ABI39_RS18745	0.30	-1.7
4,725,499	-		ABI39_RS18745	0.31	-0.1
4,725,538	-		ABI39_RS18745	0.32	-0.1
4,725,704	-		ABI39_RS18745	0.37	-0.1
4,725,885	-		ABI39_RS18745	0.42	-1.7
4,725,896	+		ABI39_RS18745	0.42	-1.1
4,725,919	+		ABI39_RS18745	0.43	-2.1
4,725,947	-		ABI39_RS18745	0.44	-1.1
4,726,493	+		ABI39_RS18745	0.59	-1.1
4,726,493	+		ABI39_RS18745	0.59	-1.7
4,726,494	-		ABI39_RS18745	0.59	-0.1
4,726,494	-		ABI39_RS18745	0.59	-1.1
4,726,697	-		ABI39_RS18745	0.65	-0.1
4,726,780	-		ABI39_RS18745	0.67	-0.1
4,726,971	-		ABI39_RS18745	0.72	-2.6
4,726,972	+		ABI39_RS18745	0.72	-2.1
4,726,975	+		ABI39_RS18745	0.73	-3.1
4,727,239	+		ABI39_RS18745	0.80	-3.1
4,727,373	+		ABI39_RS18745	0.84	-2.1
4,727,407	+		ABI39_RS18745	0.85	-0.9
4,727,526	+		ABI39_RS18745	0.88	-2.1
4,727,526	+		ABI39_RS18745	0.88	-1.7
4,727,526	+		ABI39_RS18745	0.88	-0.1
4,727,660	-				-0.1
4,727,773	+				-0.1
4,727,774	-				-0.1
4,727,921	-				-2.1
4,727,956	-				-1.1
4,727,964	-				+0.2
4,727,966	-				-0.2
4,728,020	-				-1.1
4,728,022	+				+0.4
4,728,025	-				-0.3
4,728,041	-				-0.1
4,728,041	-				-1.1
4,728,041	-				-0.2
4,728,041	-				-0.5
4,728,044	+				-0.3
4,728,045	-				-0.1
4,728,139	-				-0.1
4,728,187	-				-0.1
4,728,249	-				+1.4
4,728,289	+				+0.5
4,728,355	+		ABI39_RS18750	0.13	+0.5
4,728,360	-		ABI39_RS18750	0.13	+0.2
4,728,515	+		ABI39_RS18750	0.23	-0.4
4,728,708	-		ABI39_RS18750	0.36	+0.2
4,728,738	-		ABI39_RS18750	0.38	-0.8
4,728,870	+		ABI39_RS18750	0.47	-0.1
4,728,870	+		ABI39_RS18750	0.47	+0.7
4,728,870	+		ABI39_RS18750	0.47	-0.1
4,728,871	-		ABI39_RS18750	0.47	-0.0
4,728,871	-		ABI39_RS18750	0.47	+0.4