Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12735

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
3,333,811	+				-0.9
3,333,825	-				-2.4
3,333,967	+		ABI39_RS12730	0.23	-2.1
3,333,975	+		ABI39_RS12730	0.24	+0.3
3,333,976	-		ABI39_RS12730	0.24	-1.1
3,333,993	+		ABI39_RS12730	0.26	-0.5
3,334,059	-		ABI39_RS12730	0.35	-1.9
3,334,070	-		ABI39_RS12730	0.37	-3.1
3,334,205	+		ABI39_RS12730	0.55	+0.0
3,334,206	-		ABI39_RS12730	0.55	-3.9
3,334,293	-		ABI39_RS12730	0.67	-3.2
3,334,293	-		ABI39_RS12730	0.67	-3.2
3,334,328	-		ABI39_RS12730	0.71	-3.2
3,334,334	+		ABI39_RS12730	0.72	+0.2
3,334,338	+		ABI39_RS12730	0.73	+0.9
3,334,338	+		ABI39_RS12730	0.73	-0.2
3,334,338	+		ABI39_RS12730	0.73	-0.6
3,334,425	-		ABI39_RS12730	0.84	-0.1
3,334,427	+		ABI39_RS12730	0.85	+1.1
3,334,428	-		ABI39_RS12730	0.85	-2.9
3,334,483	-				-3.0
3,334,654	+				-2.6
3,334,655	-				-3.2
3,334,881	-		ABI39_RS12735	0.29	-1.9
3,334,889	-		ABI39_RS12735	0.30	-0.6
3,334,909	-		ABI39_RS12735	0.32	-1.9
3,334,971	-		ABI39_RS12735	0.38	-3.9
3,334,979	-		ABI39_RS12735	0.39	-3.2
3,335,084	+		ABI39_RS12735	0.49	+1.5
3,335,088	+		ABI39_RS12735	0.49	-2.9
3,335,088	+		ABI39_RS12735	0.49	-3.1
3,335,279	+		ABI39_RS12735	0.67	-3.2
3,335,279	+		ABI39_RS12735	0.67	-3.8
3,335,280	-		ABI39_RS12735	0.68	-2.2
3,335,297	+		ABI39_RS12735	0.69	-2.6
3,335,432	+		ABI39_RS12735	0.82	-3.2
3,335,456	-		ABI39_RS12735	0.84	-4.9
3,335,458	-		ABI39_RS12735	0.85	-2.6
3,335,619	+				-0.9
3,335,623	+				-1.6
3,335,630	+				-0.1
3,335,680	+				+0.8
3,335,703	-				+0.4
3,335,704	+				+0.0
3,335,714	-				-0.3
3,335,754	+				+0.1
3,335,804	-				+0.9
3,335,847	-				-0.9
3,335,853	+				+0.8
3,335,901	-		ABI39_RS12740	0.14	+0.6
3,335,911	-		ABI39_RS12740	0.15	+0.2
3,335,968	-		ABI39_RS12740	0.20	-0.7
3,335,972	-		ABI39_RS12740	0.21	+0.7
3,335,972	-		ABI39_RS12740	0.21	-0.4
3,335,972	-		ABI39_RS12740	0.21	-1.1
3,336,066	+		ABI39_RS12740	0.29	-0.2
3,336,067	-		ABI39_RS12740	0.30	-0.1
3,336,068	+		ABI39_RS12740	0.30	-0.4
3,336,069	-		ABI39_RS12740	0.30	+0.0
3,336,072	+		ABI39_RS12740	0.30	-0.4
3,336,073	-		ABI39_RS12740	0.30	+0.1
3,336,073	-		ABI39_RS12740	0.30	+0.0
3,336,073	-		ABI39_RS12740	0.30	+0.6
3,336,076	-		ABI39_RS12740	0.30	+1.0
3,336,090	+		ABI39_RS12740	0.32	+0.6
3,336,315	-		ABI39_RS12740	0.52	+0.2
3,336,321	+		ABI39_RS12740	0.53	-0.4
3,336,464	+		ABI39_RS12740	0.66	-0.6
3,336,469	+		ABI39_RS12740	0.67	+0.4
3,336,469	+		ABI39_RS12740	0.67	+0.1
3,336,519	+		ABI39_RS12740	0.71	+0.3
3,336,520	-		ABI39_RS12740	0.71	-0.1