Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12425

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
3,270,260	+				+0.3
3,270,264	+				-2.4
3,270,332	-				+0.0
3,270,355	+				-1.7
3,270,356	-				-0.6
3,270,397	-		ABI39_RS12420	0.10	-0.1
3,270,627	-		ABI39_RS12420	0.35	-1.2
3,270,708	+		ABI39_RS12420	0.44	-0.8
3,270,712	+		ABI39_RS12420	0.44	-2.4
3,270,712	+		ABI39_RS12420	0.44	-1.9
3,270,773	-		ABI39_RS12420	0.51	-0.7
3,270,773	-		ABI39_RS12420	0.51	-0.7
3,270,789	+		ABI39_RS12420	0.53	-1.7
3,270,842	-		ABI39_RS12420	0.58	-0.1
3,270,960	+		ABI39_RS12420	0.71	-0.5
3,270,961	-		ABI39_RS12420	0.71	-2.2
3,271,177	-				-0.4
3,271,177	-				-0.4
3,271,213	-				-1.3
3,271,381	+				+0.2
3,271,382	-				-0.1
3,271,382	-				-1.4
3,271,488	+		ABI39_RS12425	0.15	-0.6
3,271,543	+		ABI39_RS12425	0.18	-0.5
3,271,543	+		ABI39_RS12425	0.18	-3.1
3,271,543	+		ABI39_RS12425	0.18	-2.1
3,271,543	+		ABI39_RS12425	0.18	-1.7
3,271,613	+		ABI39_RS12425	0.23	+0.4
3,271,620	+		ABI39_RS12425	0.23	-0.1
3,271,725	+		ABI39_RS12425	0.30	-1.1
3,271,726	-		ABI39_RS12425	0.30	-1.0
3,271,743	+		ABI39_RS12425	0.31	-2.1
3,271,841	+		ABI39_RS12425	0.38	-1.7
3,271,842	-		ABI39_RS12425	0.38	+0.7
3,271,956	-		ABI39_RS12425	0.45	+0.1
3,272,034	+		ABI39_RS12425	0.50	-2.1
3,272,034	+		ABI39_RS12425	0.50	-1.6
3,272,034	+		ABI39_RS12425	0.50	-2.1
3,272,035	-		ABI39_RS12425	0.50	-0.2
3,272,071	+		ABI39_RS12425	0.52	-0.7
3,272,076	+		ABI39_RS12425	0.53	-1.3
3,272,208	+		ABI39_RS12425	0.61	-1.1
3,272,237	-		ABI39_RS12425	0.63	-2.1
3,272,333	+		ABI39_RS12425	0.69	-1.7
3,272,352	-		ABI39_RS12425	0.70	-3.5
3,272,469	+		ABI39_RS12425	0.78	-0.7
3,272,581	-		ABI39_RS12425	0.85	-1.9
3,272,825	+				-1.7
3,272,875	+				-0.7
3,273,150	-		ABI39_RS12430	0.57	-0.8
3,273,343	+				-0.9
3,273,429	-				+1.5
3,273,659	-		ABI39_RS12435	0.17	+0.5
3,273,659	-		ABI39_RS12435	0.17	-0.1
3,273,666	-		ABI39_RS12435	0.18	+0.2
3,273,666	-		ABI39_RS12435	0.18	-0.2
3,273,682	-		ABI39_RS12435	0.19	-0.2
3,273,682	-		ABI39_RS12435	0.19	-2.2
3,273,767	+		ABI39_RS12435	0.28	-0.9
3,273,777	+		ABI39_RS12435	0.29	+0.5