Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10690

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
2,850,676	+		ABI39_RS10685	0.57	-0.7
2,850,681	-		ABI39_RS10685	0.57	-0.9
2,850,681	-		ABI39_RS10685	0.57	-0.1
2,850,715	-		ABI39_RS10685	0.59	-0.2
2,850,908	-		ABI39_RS10685	0.74	-0.8
2,850,908	-		ABI39_RS10685	0.74	-0.7
2,850,992	+		ABI39_RS10685	0.80	+0.3
2,851,039	+		ABI39_RS10685	0.84	+0.4
2,851,132	-				-0.2
2,851,132	-				-0.5
2,851,220	-				-0.8
2,851,232	-				+0.7
2,851,247	-				-1.0
2,851,247	-				+0.5
2,851,262	-				+0.8
2,851,281	+				-0.1
2,851,285	-				+0.3
2,851,328	-				+0.2
2,851,521	-				+0.1
2,851,589	-				+1.2
2,851,593	-				+0.1
2,851,630	+				+0.2
2,851,637	+				-0.8
2,851,641	+				-3.3
2,851,695	-				+0.5
2,851,810	+				-0.1
2,851,967	+				-0.4
2,852,079	-		ABI39_RS10690	0.13	+0.3
2,852,153	+		ABI39_RS10690	0.15	-0.1
2,852,157	-		ABI39_RS10690	0.15	+0.3
2,852,235	+		ABI39_RS10690	0.18	+0.4
2,852,299	+		ABI39_RS10690	0.20	+0.5
2,852,385	-		ABI39_RS10690	0.22	+0.4
2,852,551	+		ABI39_RS10690	0.27	+0.1
2,852,552	-		ABI39_RS10690	0.27	+0.9
2,852,647	-		ABI39_RS10690	0.30	-0.0
2,852,679	+		ABI39_RS10690	0.31	+0.2
2,852,747	-		ABI39_RS10690	0.33	-0.2
2,852,756	+		ABI39_RS10690	0.34	+1.1
2,852,793	+		ABI39_RS10690	0.35	-0.2
2,852,794	-		ABI39_RS10690	0.35	-0.7
2,852,812	-		ABI39_RS10690	0.35	+0.8
2,852,813	+		ABI39_RS10690	0.35	+0.5
2,852,814	-		ABI39_RS10690	0.35	+0.2
2,852,901	-		ABI39_RS10690	0.38	+0.0
2,852,909	+		ABI39_RS10690	0.38	+0.9
2,852,909	+		ABI39_RS10690	0.38	-0.2
2,852,924	+		ABI39_RS10690	0.39	+0.1
2,852,928	+		ABI39_RS10690	0.39	+1.0
2,852,991	+		ABI39_RS10690	0.41	+0.2
2,853,025	-		ABI39_RS10690	0.42	-0.2
2,853,027	-		ABI39_RS10690	0.42	+0.4
2,853,027	-		ABI39_RS10690	0.42	-0.0
2,853,227	+		ABI39_RS10690	0.48	-0.1
2,853,228	-		ABI39_RS10690	0.48	+0.1
2,853,228	-		ABI39_RS10690	0.48	+0.5
2,853,240	-		ABI39_RS10690	0.48	-0.2
2,853,240	-		ABI39_RS10690	0.48	+0.2
2,853,290	-		ABI39_RS10690	0.50	+0.4
2,853,290	-		ABI39_RS10690	0.50	+0.2
2,853,497	-		ABI39_RS10690	0.56	-0.3
2,853,552	-		ABI39_RS10690	0.58	+0.8
2,853,554	-		ABI39_RS10690	0.58	+0.6
2,853,554	-		ABI39_RS10690	0.58	-1.1
2,853,557	+		ABI39_RS10690	0.58	-0.6
2,853,571	+		ABI39_RS10690	0.59	-1.1
2,853,625	+		ABI39_RS10690	0.60	+0.7
2,853,730	+		ABI39_RS10690	0.63	+0.0
2,853,764	-		ABI39_RS10690	0.64	+0.4
2,853,849	+		ABI39_RS10690	0.67	+0.5
2,853,872	-		ABI39_RS10690	0.68	+0.5
2,854,084	+		ABI39_RS10690	0.74	+0.0
2,854,097	-		ABI39_RS10690	0.75	+0.2
2,854,103	+		ABI39_RS10690	0.75	-0.3
2,854,139	-		ABI39_RS10690	0.76	-1.4
2,854,142	-		ABI39_RS10690	0.76	-0.1
2,854,210	+		ABI39_RS10690	0.78	-0.2
2,854,210	+		ABI39_RS10690	0.78	-0.2
2,854,217	+		ABI39_RS10690	0.78	+1.2
2,854,217	+		ABI39_RS10690	0.78	-0.3
2,854,218	-		ABI39_RS10690	0.78	-0.8
2,854,219	+		ABI39_RS10690	0.78	-0.2
2,854,220	-		ABI39_RS10690	0.78	-1.3
2,854,239	+		ABI39_RS10690	0.79	+0.5
2,854,240	-		ABI39_RS10690	0.79	+1.5
2,854,298	-		ABI39_RS10690	0.81	-0.1
2,854,396	+		ABI39_RS10690	0.84	-0.3
2,854,403	-		ABI39_RS10690	0.84	+0.7
2,854,554	+		ABI39_RS10690	0.89	-2.1
2,854,620	+				+0.1
2,854,662	-				+0.1
2,854,718	-				-0.2
2,854,738	+				-0.2
2,854,746	+				+2.2
2,854,747	-				+0.3
2,854,747	-				+0.3
2,854,748	+				+0.1
2,854,748	+				-0.0
2,854,817	-				+0.4
2,854,928	+				-0.2
2,854,936	+				-0.3
2,855,083	-				-0.4
2,855,127	+		ABI39_RS10695	0.12	-0.3
2,855,127	+		ABI39_RS10695	0.12	-0.9
2,855,128	-		ABI39_RS10695	0.12	+0.1
2,855,128	-		ABI39_RS10695	0.12	+0.6
2,855,203	-		ABI39_RS10695	0.16	+0.5
2,855,240	-		ABI39_RS10695	0.18	-0.0
2,855,243	-		ABI39_RS10695	0.19	-0.7
2,855,247	+		ABI39_RS10695	0.19	+0.5
2,855,248	-		ABI39_RS10695	0.19	-0.0
2,855,255	-		ABI39_RS10695	0.19	+0.8
2,855,262	-		ABI39_RS10695	0.20	+0.1
2,855,269	-		ABI39_RS10695	0.20	+0.4
2,855,311	+		ABI39_RS10695	0.23	-0.1
2,855,329	+		ABI39_RS10695	0.24	-0.5
2,855,492	-		ABI39_RS10695	0.34	+0.2
2,855,493	+		ABI39_RS10695	0.34	+1.1
2,855,575	-		ABI39_RS10695	0.39	-0.8
2,855,655	-		ABI39_RS10695	0.44	+0.1
2,855,789	+		ABI39_RS10695	0.52	+0.7
2,855,794	+		ABI39_RS10695	0.52	+0.8
2,855,820	-		ABI39_RS10695	0.54	+0.6
2,855,890	+		ABI39_RS10695	0.58	+0.5