Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10500

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
2,805,016	+				-0.1
2,805,042	-				+0.5
2,805,094	+				-0.2
2,805,112	+				-1.7
2,805,216	+		ABI39_RS10495	0.14	-5.7
2,805,262	+		ABI39_RS10495	0.20	-3.4
2,805,280	-		ABI39_RS10495	0.22	-4.6
2,805,291	+		ABI39_RS10495	0.23	-4.6
2,805,572	-		ABI39_RS10495	0.60	-2.4
2,805,663	+		ABI39_RS10495	0.71	-2.7
2,805,686	+		ABI39_RS10495	0.74	-4.4
2,805,688	+		ABI39_RS10495	0.75	-3.6
2,805,796	-		ABI39_RS10495	0.89	-4.1
2,805,867	+				-3.1
2,805,894	+				-4.4
2,805,894	+				-3.9
2,806,044	+		ABI39_RS10500	0.15	-2.9
2,806,328	-		ABI39_RS10500	0.41	-4.0
2,806,563	+		ABI39_RS10500	0.63	-2.7
2,806,564	-		ABI39_RS10500	0.63	-3.6
2,806,674	-		ABI39_RS10500	0.74	-2.4
2,806,709	+		ABI39_RS10500	0.77	-1.7
2,806,709	+		ABI39_RS10500	0.77	-3.6
2,806,709	+		ABI39_RS10500	0.77	-2.4
2,806,710	-		ABI39_RS10500	0.77	-0.7
2,806,756	+		ABI39_RS10500	0.81	-1.1
2,806,851	+				-1.1
2,806,858	-				-1.7
2,806,949	-				-4.4
2,807,046	-				-4.4
2,807,050	-				-3.6
2,807,173	+		ABI39_RS10505	0.17	-1.7
2,807,173	+		ABI39_RS10505	0.17	-1.1
2,807,174	-		ABI39_RS10505	0.17	-4.9
2,807,174	-		ABI39_RS10505	0.17	-5.0
2,807,249	+		ABI39_RS10505	0.23	-2.4
2,807,249	+		ABI39_RS10505	0.23	-3.5
2,807,250	-		ABI39_RS10505	0.23	-4.9
2,807,293	-		ABI39_RS10505	0.27	-3.5
2,807,345	-		ABI39_RS10505	0.31	+0.5
2,807,539	+		ABI39_RS10505	0.48	-2.4
2,807,629	+		ABI39_RS10505	0.55	-1.7
2,807,749	-		ABI39_RS10505	0.65	-4.8
2,807,749	-		ABI39_RS10505	0.65	-5.0
2,807,777	+		ABI39_RS10505	0.68	-3.7
2,807,778	-		ABI39_RS10505	0.68	-4.4
2,807,881	-		ABI39_RS10505	0.76	-3.9