Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01405 and ABI39_RS01410 are separated by 121 nucleotides ABI39_RS01410 and ABI39_RS01415 are separated by 17 nucleotides ABI39_RS01415 and ABI39_RS01420 are separated by 182 nucleotides ABI39_RS01420 and ABI39_RS01425 are separated by 8 nucleotides
ABI39_RS01405: ABI39_RS01405 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 428,741 to 429,499
_RS01405
ABI39_RS01410: ABI39_RS01410 - DUF975 family protein, at 429,621 to 430,247
_RS01410
ABI39_RS01415: ABI39_RS01415 - branched-chain amino acid aminotransferase, at 430,265 to 431,284
_RS01415
ABI39_RS01420: ABI39_RS01420 - exodeoxyribonuclease VII small subunit, at 431,467 to 431,670
_RS01420
ABI39_RS01425: ABI39_RS01425 - exodeoxyribonuclease VII large subunit, at 431,679 to 432,986
_RS01425
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1 at 429.270 kb on - strand, within ABI39_RS01405 at 429.276 kb on - strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.304 kb on + strand, within ABI39_RS01405 at 429.617 kb on + strand at 429.622 kb on + strand at 429.696 kb on + strand, within ABI39_RS01410 at 429.696 kb on + strand, within ABI39_RS01410 at 429.697 kb on - strand, within ABI39_RS01410 at 429.795 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.939 kb on - strand, within ABI39_RS01410 at 429.940 kb on + strand, within ABI39_RS01410 at 429.941 kb on - strand, within ABI39_RS01410 at 430.053 kb on - strand, within ABI39_RS01410 at 430.121 kb on + strand, within ABI39_RS01410 at 430.289 kb on - strand at 430.294 kb on + strand at 430.372 kb on + strand, within ABI39_RS01415 at 430.378 kb on + strand, within ABI39_RS01415 at 430.511 kb on - strand, within ABI39_RS01415 at 430.722 kb on + strand, within ABI39_RS01415 at 430.784 kb on - strand, within ABI39_RS01415 at 430.787 kb on - strand, within ABI39_RS01415 at 430.894 kb on + strand, within ABI39_RS01415 at 430.916 kb on - strand, within ABI39_RS01415 at 431.084 kb on - strand, within ABI39_RS01415 at 431.215 kb on - strand at 431.290 kb on - strand at 431.303 kb on + strand at 431.360 kb on - strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.435 kb on - strand at 431.435 kb on - strand at 431.694 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.795 kb on + strand at 431.796 kb on - strand at 432.042 kb on + strand, within ABI39_RS01425 at 432.089 kb on + strand, within ABI39_RS01425 at 432.090 kb on - strand, within ABI39_RS01425 at 432.153 kb on - strand, within ABI39_RS01425 at 432.158 kb on - strand, within ABI39_RS01425 at 432.191 kb on + strand, within ABI39_RS01425 at 432.246 kb on - strand, within ABI39_RS01425 at 432.248 kb on + strand, within ABI39_RS01425 at 432.249 kb on - strand, within ABI39_RS01425 at 432.249 kb on - strand, within ABI39_RS01425 at 432.254 kb on + strand, within ABI39_RS01425 at 432.272 kb on + strand, within ABI39_RS01425
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) remove 429,270 - ABI39_RS01405 0.70 +0.4 429,276 - ABI39_RS01405 0.70 +0.4 429,304 + ABI39_RS01405 0.74 -0.2 429,304 + ABI39_RS01405 0.74 -0.2 429,617 + -0.1 429,622 + -1.9 429,696 + ABI39_RS01410 0.12 +0.2 429,696 + ABI39_RS01410 0.12 +0.0 429,697 - ABI39_RS01410 0.12 -0.0 429,795 - ABI39_RS01410 0.28 -0.2 429,939 - ABI39_RS01410 0.51 +0.3 429,939 - ABI39_RS01410 0.51 +0.1 429,940 + ABI39_RS01410 0.51 +0.2 429,941 - ABI39_RS01410 0.51 -0.7 430,053 - ABI39_RS01410 0.69 +0.1 430,121 + ABI39_RS01410 0.80 -0.3 430,289 - -2.1 430,294 + -1.7 430,372 + ABI39_RS01415 0.10 -1.7 430,378 + ABI39_RS01415 0.11 -0.1 430,511 - ABI39_RS01415 0.24 -1.1 430,722 + ABI39_RS01415 0.45 -0.1 430,784 - ABI39_RS01415 0.51 +0.9 430,787 - ABI39_RS01415 0.51 -2.4 430,894 + ABI39_RS01415 0.62 -1.7 430,916 - ABI39_RS01415 0.64 -2.4 431,084 - ABI39_RS01415 0.80 -1.7 431,215 - -0.1 431,290 - -2.4 431,303 + -1.1 431,360 - -0.9 431,421 - +0.1 431,421 - -0.5 431,421 - +0.4 431,435 - +0.3 431,435 - +0.4 431,694 + -0.3 431,795 + -0.2 431,795 + -0.5 431,795 + -1.2 431,795 + -0.8 431,796 - -0.5 432,042 + ABI39_RS01425 0.28 +0.9 432,089 + ABI39_RS01425 0.31 -0.1 432,090 - ABI39_RS01425 0.31 +0.2 432,153 - ABI39_RS01425 0.36 +0.6 432,158 - ABI39_RS01425 0.37 +0.3 432,191 + ABI39_RS01425 0.39 +0.2 432,246 - ABI39_RS01425 0.43 +0.1 432,248 + ABI39_RS01425 0.44 -0.7 432,249 - ABI39_RS01425 0.44 -1.4 432,249 - ABI39_RS01425 0.44 +0.2 432,254 + ABI39_RS01425 0.44 -1.4 432,272 + ABI39_RS01425 0.45 -0.1
Or see this region's nucleotide sequence