Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00200 and ABI39_RS00205 are separated by 91 nucleotides ABI39_RS00205 and ABI39_RS00210 overlap by 4 nucleotides ABI39_RS00210 and ABI39_RS00215 are separated by 82 nucleotides
ABI39_RS00200: ABI39_RS00200 - glycoside hydrolase family 16 protein, at 57,952 to 58,743
_RS00200
ABI39_RS00205: ABI39_RS00205 - phosphoglucosamine mutase, at 58,835 to 60,223
_RS00205
ABI39_RS00210: ABI39_RS00210 - DUF4827 domain-containing protein, at 60,220 to 60,855
_RS00210
ABI39_RS00215: ABI39_RS00215 - bifunctional oligoribonuclease/PAP phosphatase NrnA, at 60,938 to 61,978
_RS00215
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.867 kb on - strand at 57.900 kb on - strand at 57.969 kb on - strand at 58.051 kb on + strand, within ABI39_RS00200 at 58.120 kb on - strand, within ABI39_RS00200 at 58.120 kb on - strand, within ABI39_RS00200 at 58.120 kb on - strand, within ABI39_RS00200 at 58.121 kb on + strand, within ABI39_RS00200 at 58.167 kb on + strand, within ABI39_RS00200 at 58.168 kb on - strand, within ABI39_RS00200 at 58.183 kb on - strand, within ABI39_RS00200 at 58.183 kb on - strand, within ABI39_RS00200 at 58.188 kb on - strand, within ABI39_RS00200 at 58.209 kb on + strand, within ABI39_RS00200 at 58.209 kb on + strand, within ABI39_RS00200 at 58.210 kb on - strand, within ABI39_RS00200 at 58.213 kb on - strand, within ABI39_RS00200 at 58.240 kb on - strand, within ABI39_RS00200 at 58.254 kb on + strand, within ABI39_RS00200 at 58.260 kb on - strand, within ABI39_RS00200 at 58.362 kb on + strand, within ABI39_RS00200 at 58.536 kb on - strand, within ABI39_RS00200 at 58.557 kb on + strand, within ABI39_RS00200 at 58.557 kb on + strand, within ABI39_RS00200 at 58.558 kb on - strand, within ABI39_RS00200 at 58.559 kb on + strand, within ABI39_RS00200 at 58.559 kb on + strand, within ABI39_RS00200 at 58.588 kb on + strand, within ABI39_RS00200 at 58.589 kb on - strand, within ABI39_RS00200 at 58.645 kb on + strand, within ABI39_RS00200 at 58.791 kb on + strand at 58.850 kb on - strand at 58.850 kb on - strand at 58.956 kb on - strand at 58.991 kb on + strand, within ABI39_RS00205 at 58.991 kb on + strand, within ABI39_RS00205 at 59.103 kb on + strand, within ABI39_RS00205 at 59.211 kb on - strand, within ABI39_RS00205 at 59.384 kb on + strand, within ABI39_RS00205 at 59.388 kb on + strand, within ABI39_RS00205 at 59.522 kb on - strand, within ABI39_RS00205 at 59.729 kb on - strand, within ABI39_RS00205 at 59.732 kb on + strand, within ABI39_RS00205 at 59.732 kb on + strand, within ABI39_RS00205 at 59.748 kb on + strand, within ABI39_RS00205 at 60.027 kb on - strand, within ABI39_RS00205 at 60.055 kb on + strand, within ABI39_RS00205 at 60.138 kb on + strand at 60.354 kb on - strand, within ABI39_RS00210 at 60.387 kb on - strand, within ABI39_RS00210 at 60.408 kb on - strand, within ABI39_RS00210 at 60.408 kb on - strand, within ABI39_RS00210 at 60.430 kb on - strand, within ABI39_RS00210 at 60.624 kb on - strand, within ABI39_RS00210 at 60.892 kb on - strand at 60.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) remove 57,867 - +0.9 57,900 - +0.3 57,969 - -0.4 58,051 + ABI39_RS00200 0.12 -0.3 58,120 - ABI39_RS00200 0.21 -0.4 58,120 - ABI39_RS00200 0.21 +0.5 58,120 - ABI39_RS00200 0.21 +0.2 58,121 + ABI39_RS00200 0.21 +0.9 58,167 + ABI39_RS00200 0.27 +0.7 58,168 - ABI39_RS00200 0.27 +0.2 58,183 - ABI39_RS00200 0.29 -0.0 58,183 - ABI39_RS00200 0.29 -0.4 58,188 - ABI39_RS00200 0.30 -0.8 58,209 + ABI39_RS00200 0.32 +0.9 58,209 + ABI39_RS00200 0.32 -0.3 58,210 - ABI39_RS00200 0.33 -0.3 58,213 - ABI39_RS00200 0.33 +0.7 58,240 - ABI39_RS00200 0.36 -0.6 58,254 + ABI39_RS00200 0.38 +0.8 58,260 - ABI39_RS00200 0.39 +0.5 58,362 + ABI39_RS00200 0.52 +1.3 58,536 - ABI39_RS00200 0.74 -0.3 58,557 + ABI39_RS00200 0.76 +0.4 58,557 + ABI39_RS00200 0.76 +0.2 58,558 - ABI39_RS00200 0.77 +0.6 58,559 + ABI39_RS00200 0.77 +0.7 58,559 + ABI39_RS00200 0.77 +0.0 58,588 + ABI39_RS00200 0.80 +0.2 58,589 - ABI39_RS00200 0.80 -0.3 58,645 + ABI39_RS00200 0.88 +0.5 58,791 + +0.1 58,850 - +1.9 58,850 - +0.2 58,956 - -2.9 58,991 + ABI39_RS00205 0.11 -1.7 58,991 + ABI39_RS00205 0.11 -2.4 59,103 + ABI39_RS00205 0.19 -1.1 59,211 - ABI39_RS00205 0.27 -2.4 59,384 + ABI39_RS00205 0.40 -2.1 59,388 + ABI39_RS00205 0.40 -1.1 59,522 - ABI39_RS00205 0.49 -1.1 59,729 - ABI39_RS00205 0.64 -1.1 59,732 + ABI39_RS00205 0.65 -3.1 59,732 + ABI39_RS00205 0.65 -0.1 59,748 + ABI39_RS00205 0.66 -1.1 60,027 - ABI39_RS00205 0.86 -1.1 60,055 + ABI39_RS00205 0.88 -2.1 60,138 + -0.1 60,354 - ABI39_RS00210 0.21 -0.1 60,387 - ABI39_RS00210 0.26 -1.7 60,408 - ABI39_RS00210 0.30 -1.7 60,408 - ABI39_RS00210 0.30 -0.1 60,430 - ABI39_RS00210 0.33 -0.8 60,624 - ABI39_RS00210 0.64 -1.0 60,892 - +0.4 60,906 + -1.7
Or see this region's nucleotide sequence