Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21340 and ABI39_RS21345 are separated by 310 nucleotides ABI39_RS21345 and ABI39_RS21350 are separated by 202 nucleotides ABI39_RS21350 and ABI39_RS21355 are separated by 115 nucleotides ABI39_RS21355 and ABI39_RS21360 are separated by 89 nucleotides
ABI39_RS21340: ABI39_RS21340 - TonB-dependent receptor, at 5,263,384 to 5,266,659
_RS21340
ABI39_RS21345: ABI39_RS21345 - tRNA-Arg, at 5,266,970 to 5,267,041
_RS21345
ABI39_RS21350: ABI39_RS21350 - aspartate--ammonia ligase, at 5,267,244 to 5,268,284
_RS21350
ABI39_RS21355: ABI39_RS21355 - uracil-DNA glycosylase, at 5,268,400 to 5,269,062
_RS21355
ABI39_RS21360: ABI39_RS21360 - LPS-assembly protein LptD, at 5,269,152 to 5,271,887
_RS21360
Position (kb) 5267
5268
5269 Strain fitness (log2 ratio) -1
0
1 at 5266.446 kb on - strand at 5266.486 kb on - strand at 5266.528 kb on + strand at 5266.634 kb on - strand at 5266.919 kb on + strand at 5267.106 kb on + strand at 5267.526 kb on + strand, within ABI39_RS21350 at 5267.594 kb on + strand, within ABI39_RS21350 at 5267.614 kb on + strand, within ABI39_RS21350 at 5267.695 kb on - strand, within ABI39_RS21350 at 5267.718 kb on + strand, within ABI39_RS21350 at 5267.841 kb on - strand, within ABI39_RS21350 at 5267.872 kb on + strand, within ABI39_RS21350 at 5268.149 kb on + strand, within ABI39_RS21350 at 5268.229 kb on + strand at 5268.383 kb on + strand at 5268.408 kb on - strand at 5268.485 kb on + strand, within ABI39_RS21355 at 5268.510 kb on + strand, within ABI39_RS21355 at 5268.531 kb on + strand, within ABI39_RS21355 at 5268.531 kb on + strand, within ABI39_RS21355 at 5268.533 kb on + strand, within ABI39_RS21355 at 5268.874 kb on - strand, within ABI39_RS21355 at 5268.899 kb on - strand, within ABI39_RS21355 at 5268.924 kb on - strand, within ABI39_RS21355 at 5269.024 kb on + strand at 5269.066 kb on + strand at 5269.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) remove 5,266,446 - +0.2 5,266,486 - -0.1 5,266,528 + -0.9 5,266,634 - -0.9 5,266,919 + -0.7 5,267,106 + +1.2 5,267,526 + ABI39_RS21350 0.27 -0.6 5,267,594 + ABI39_RS21350 0.34 +0.4 5,267,614 + ABI39_RS21350 0.36 +0.4 5,267,695 - ABI39_RS21350 0.43 +0.4 5,267,718 + ABI39_RS21350 0.46 -0.2 5,267,841 - ABI39_RS21350 0.57 -0.2 5,267,872 + ABI39_RS21350 0.60 -0.2 5,268,149 + ABI39_RS21350 0.87 -0.9 5,268,229 + +1.4 5,268,383 + +0.1 5,268,408 - -0.0 5,268,485 + ABI39_RS21355 0.13 +0.1 5,268,510 + ABI39_RS21355 0.17 +0.5 5,268,531 + ABI39_RS21355 0.20 -1.2 5,268,531 + ABI39_RS21355 0.20 -0.2 5,268,533 + ABI39_RS21355 0.20 -0.9 5,268,874 - ABI39_RS21355 0.71 +0.1 5,268,899 - ABI39_RS21355 0.75 -0.5 5,268,924 - ABI39_RS21355 0.79 +0.6 5,269,024 + -0.6 5,269,066 + +0.2 5,269,066 + -0.2
Or see this region's nucleotide sequence