Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19945

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
4,928,397	-		ABI39_RS19935	0.81	-2.5
4,928,415	+		ABI39_RS19935	0.83	-2.2
4,928,418	-		ABI39_RS19935	0.84	-1.9
4,928,418	-		ABI39_RS19935	0.84	-3.1
4,928,418	-		ABI39_RS19935	0.84	-0.9
4,928,430	+		ABI39_RS19935	0.86	-2.2
4,928,430	+		ABI39_RS19935	0.86	-2.1
4,928,431	-		ABI39_RS19935	0.86	-1.9
4,928,513	+				-0.1
4,928,544	-				+0.9
4,928,551	+				-1.0
4,928,553	+				+0.2
4,928,556	-				-0.3
4,928,572	+				+0.1
4,928,622	+		ABI39_RS19940	0.14	+0.5
4,928,748	-		ABI39_RS19940	0.30	+0.1
4,929,348	-				-1.4
4,929,348	-				-1.8
4,929,353	+				-0.3
4,929,357	-				-2.2
4,929,451	-				-2.2
4,929,537	-		ABI39_RS19945	0.12	-2.2
4,929,631	+		ABI39_RS19945	0.19	-1.6
4,929,631	+		ABI39_RS19945	0.19	-2.1
4,929,684	-		ABI39_RS19945	0.23	-1.9
4,929,720	+		ABI39_RS19945	0.26	-1.9
4,929,768	-		ABI39_RS19945	0.29	-1.6
4,929,798	+		ABI39_RS19945	0.31	-1.4
4,929,854	+		ABI39_RS19945	0.36	-1.7
4,929,857	-		ABI39_RS19945	0.36	-0.6
4,929,882	+		ABI39_RS19945	0.38	-1.3
4,929,882	+		ABI39_RS19945	0.38	-1.8
4,929,888	+		ABI39_RS19945	0.38	-2.0
4,929,911	-		ABI39_RS19945	0.40	-1.8
4,929,955	+		ABI39_RS19945	0.43	-1.2
4,929,955	+		ABI39_RS19945	0.43	-0.6
4,930,008	+		ABI39_RS19945	0.47	-1.5
4,930,074	+		ABI39_RS19945	0.52	-0.5
4,930,131	-		ABI39_RS19945	0.57	-1.6
4,930,157	-		ABI39_RS19945	0.59	-1.4
4,930,178	+		ABI39_RS19945	0.60	-0.4
4,930,179	-		ABI39_RS19945	0.60	-0.6
4,930,208	-		ABI39_RS19945	0.62	-1.4
4,930,219	+		ABI39_RS19945	0.63	-3.2
4,930,321	+		ABI39_RS19945	0.71	+0.6
4,930,374	-		ABI39_RS19945	0.75	+1.4
4,930,476	-		ABI39_RS19945	0.83	-2.3
4,930,620	-				-2.5
4,930,908	+				-1.4
4,930,930	-		ABI39_RS19950	0.10	-0.9
4,930,987	-		ABI39_RS19950	0.15	-0.2
4,931,072	+		ABI39_RS19950	0.23	+0.4
4,931,087	+		ABI39_RS19950	0.24	-0.2
4,931,237	+		ABI39_RS19950	0.37	-0.9
4,931,363	+		ABI39_RS19950	0.48	-1.8
4,931,450	-		ABI39_RS19950	0.55	-0.9
4,931,450	-		ABI39_RS19950	0.55	-0.2
4,931,468	+		ABI39_RS19950	0.57	-0.6
4,931,469	-		ABI39_RS19950	0.57	-0.2
4,931,624	+		ABI39_RS19950	0.70	-0.6
4,931,625	-		ABI39_RS19950	0.70	-0.9
4,931,697	-		ABI39_RS19950	0.76	+1.4
4,931,697	-		ABI39_RS19950	0.76	+0.4