Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18330

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
4,619,013	-				+0.4
4,619,013	-				-0.1
4,619,015	-				-0.5
4,619,029	+				+0.6
4,619,129	-				-0.1
4,619,164	-		ABI39_RS18325	0.14	-0.3
4,619,395	+		ABI39_RS18325	0.44	+0.4
4,619,547	-		ABI39_RS18325	0.64	+1.4
4,619,610	-		ABI39_RS18325	0.73	-0.6
4,619,675	+		ABI39_RS18325	0.81	+0.7
4,619,708	+		ABI39_RS18325	0.86	+1.0
4,619,762	-				-0.3
4,619,816	-				+0.5
4,619,816	-				-1.6
4,619,863	+				+0.4
4,619,972	+				-1.5
4,619,992	+				-2.7
4,620,123	-		ABI39_RS18330	0.12	-0.2
4,620,181	-		ABI39_RS18330	0.16	-1.4
4,620,238	+		ABI39_RS18330	0.20	-1.0
4,620,243	+		ABI39_RS18330	0.20	-1.2
4,620,243	+		ABI39_RS18330	0.20	-3.2
4,620,243	+		ABI39_RS18330	0.20	-2.2
4,620,292	+		ABI39_RS18330	0.24	-1.7
4,620,293	-		ABI39_RS18330	0.24	-2.9
4,620,352	+		ABI39_RS18330	0.28	-2.6
4,620,397	+		ABI39_RS18330	0.31	-0.9
4,620,397	+		ABI39_RS18330	0.31	+0.9
4,620,398	-		ABI39_RS18330	0.31	-0.9
4,620,405	-		ABI39_RS18330	0.32	-0.6
4,620,442	-		ABI39_RS18330	0.34	-1.9
4,620,568	-		ABI39_RS18330	0.43	-2.5
4,620,641	-		ABI39_RS18330	0.48	-1.2
4,620,679	-		ABI39_RS18330	0.51	-0.2
4,620,682	-		ABI39_RS18330	0.51	-1.4
4,620,756	+		ABI39_RS18330	0.57	+2.0
4,620,807	+		ABI39_RS18330	0.60	-0.6
4,620,808	-		ABI39_RS18330	0.60	+1.4
4,620,808	-		ABI39_RS18330	0.60	-1.4
4,620,810	-		ABI39_RS18330	0.60	-1.4
4,620,814	-		ABI39_RS18330	0.61	-2.2
4,620,884	+		ABI39_RS18330	0.66	-0.2
4,621,091	-		ABI39_RS18330	0.80	-1.4
4,621,379	-				+0.1
4,621,390	+				+0.1
4,621,466	+		ABI39_RS18335	0.18	-0.3
4,621,468	+		ABI39_RS18335	0.18	-1.0
4,621,498	+		ABI39_RS18335	0.24	+0.9
4,621,550	+		ABI39_RS18335	0.35	-1.1
4,621,699	+		ABI39_RS18335	0.67	+2.0
4,621,801	-		ABI39_RS18335	0.89	-0.7
4,621,801	-		ABI39_RS18335	0.89	-3.0
4,621,916	+				-1.4
4,621,973	+				-0.2
4,621,998	+				-0.3
4,622,015	-				+0.4
4,622,061	-				-0.8
4,622,071	+				+0.5
4,622,199	+		ABI39_RS18340	0.20	+0.8
4,622,211	-		ABI39_RS18340	0.21	+0.3
4,622,215	-		ABI39_RS18340	0.22	+0.6
4,622,245	+		ABI39_RS18340	0.25	-0.7
4,622,245	+		ABI39_RS18340	0.25	+0.4
4,622,246	-		ABI39_RS18340	0.25	+0.1
4,622,277	-		ABI39_RS18340	0.28	-1.2