Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS16885 and ABI39_RS16890 are separated by 24 nucleotides ABI39_RS16890 and ABI39_RS16895 are separated by 18 nucleotides ABI39_RS16895 and ABI39_RS16900 are separated by 90 nucleotides
ABI39_RS16885: ABI39_RS16885 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 4,282,996 to 4,283,634
_RS16885
ABI39_RS16890: ABI39_RS16890 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 4,283,659 to 4,284,255
_RS16890
ABI39_RS16895: ABI39_RS16895 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 4,284,274 to 4,285,548
_RS16895
ABI39_RS16900: ABI39_RS16900 - DEAD/DEAH box helicase, at 4,285,639 to 4,286,958
_RS16900
Position (kb) 4284
4285
4286 Strain fitness (log2 ratio) -2
-1
0
1 at 4283.291 kb on + strand, within ABI39_RS16885 at 4283.311 kb on + strand, within ABI39_RS16885 at 4283.316 kb on - strand, within ABI39_RS16885 at 4283.338 kb on - strand, within ABI39_RS16885 at 4283.367 kb on + strand, within ABI39_RS16885 at 4283.665 kb on + strand at 4283.681 kb on - strand at 4283.771 kb on + strand, within ABI39_RS16890 at 4283.808 kb on - strand, within ABI39_RS16890 at 4283.874 kb on - strand, within ABI39_RS16890 at 4284.018 kb on + strand, within ABI39_RS16890 at 4284.297 kb on + strand at 4284.301 kb on - strand at 4284.339 kb on + strand at 4284.390 kb on - strand at 4284.393 kb on + strand at 4284.419 kb on + strand, within ABI39_RS16895 at 4284.420 kb on - strand, within ABI39_RS16895 at 4284.463 kb on - strand, within ABI39_RS16895 at 4284.920 kb on - strand, within ABI39_RS16895 at 4284.968 kb on + strand, within ABI39_RS16895 at 4284.968 kb on + strand, within ABI39_RS16895 at 4284.973 kb on - strand, within ABI39_RS16895 at 4285.049 kb on - strand, within ABI39_RS16895 at 4285.186 kb on - strand, within ABI39_RS16895 at 4285.238 kb on - strand, within ABI39_RS16895 at 4285.447 kb on + strand at 4285.448 kb on - strand at 4285.448 kb on - strand at 4285.528 kb on + strand at 4285.568 kb on + strand at 4285.640 kb on + strand at 4285.644 kb on + strand at 4285.645 kb on - strand at 4285.659 kb on - strand at 4285.659 kb on - strand at 4285.736 kb on + strand at 4285.742 kb on + strand at 4285.777 kb on + strand, within ABI39_RS16900 at 4285.868 kb on + strand, within ABI39_RS16900 at 4285.910 kb on + strand, within ABI39_RS16900 at 4286.071 kb on - strand, within ABI39_RS16900 at 4286.224 kb on + strand, within ABI39_RS16900 at 4286.255 kb on + strand, within ABI39_RS16900 at 4286.256 kb on - strand, within ABI39_RS16900 at 4286.256 kb on - strand, within ABI39_RS16900 at 4286.256 kb on - strand, within ABI39_RS16900 at 4286.264 kb on + strand, within ABI39_RS16900 at 4286.265 kb on - strand, within ABI39_RS16900 at 4286.268 kb on - strand, within ABI39_RS16900 at 4286.487 kb on + strand, within ABI39_RS16900 at 4286.543 kb on + strand, within ABI39_RS16900 at 4286.543 kb on + strand, within ABI39_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) remove 4,283,291 + ABI39_RS16885 0.46 +1.4 4,283,311 + ABI39_RS16885 0.49 -0.9 4,283,316 - ABI39_RS16885 0.50 -0.2 4,283,338 - ABI39_RS16885 0.54 +0.4 4,283,367 + ABI39_RS16885 0.58 -1.2 4,283,665 + -0.2 4,283,681 - +0.4 4,283,771 + ABI39_RS16890 0.19 -0.2 4,283,808 - ABI39_RS16890 0.25 +0.4 4,283,874 - ABI39_RS16890 0.36 +1.4 4,284,018 + ABI39_RS16890 0.60 +1.4 4,284,297 + -0.2 4,284,301 - +1.4 4,284,339 + -0.9 4,284,390 - +0.4 4,284,393 + +0.4 4,284,419 + ABI39_RS16895 0.11 +0.4 4,284,420 - ABI39_RS16895 0.11 -0.6 4,284,463 - ABI39_RS16895 0.15 -0.2 4,284,920 - ABI39_RS16895 0.51 +0.4 4,284,968 + ABI39_RS16895 0.54 -0.2 4,284,968 + ABI39_RS16895 0.54 -0.2 4,284,973 - ABI39_RS16895 0.55 +1.4 4,285,049 - ABI39_RS16895 0.61 -0.2 4,285,186 - ABI39_RS16895 0.72 +0.4 4,285,238 - ABI39_RS16895 0.76 -0.2 4,285,447 + -0.9 4,285,448 - -0.2 4,285,448 - +1.4 4,285,528 + -1.2 4,285,568 + -0.5 4,285,640 + -0.6 4,285,644 + +0.9 4,285,645 - +0.2 4,285,659 - +0.8 4,285,659 - +1.4 4,285,736 + -0.6 4,285,742 + -0.7 4,285,777 + ABI39_RS16900 0.10 +0.8 4,285,868 + ABI39_RS16900 0.17 +1.0 4,285,910 + ABI39_RS16900 0.21 +0.4 4,286,071 - ABI39_RS16900 0.33 -0.7 4,286,224 + ABI39_RS16900 0.44 +0.1 4,286,255 + ABI39_RS16900 0.47 +0.4 4,286,256 - ABI39_RS16900 0.47 -0.2 4,286,256 - ABI39_RS16900 0.47 +0.4 4,286,256 - ABI39_RS16900 0.47 +0.0 4,286,264 + ABI39_RS16900 0.47 +1.4 4,286,265 - ABI39_RS16900 0.47 +0.7 4,286,268 - ABI39_RS16900 0.48 +0.4 4,286,487 + ABI39_RS16900 0.64 -1.9 4,286,543 + ABI39_RS16900 0.68 -1.2 4,286,543 + ABI39_RS16900 0.68 -0.3
Or see this region's nucleotide sequence