Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15475

Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
3,999,511	-		ABI39_RS15470	0.46	+0.5
3,999,618	-		ABI39_RS15470	0.55	-0.9
3,999,831	-		ABI39_RS15470	0.73	+0.3
3,999,988	-		ABI39_RS15470	0.86	+0.8
3,999,988	-		ABI39_RS15470	0.86	-1.2
3,999,990	-		ABI39_RS15470	0.86	-0.5
4,000,010	+		ABI39_RS15470	0.88	+0.1
4,000,155	+				-0.4
4,000,219	+				-0.6
4,000,219	+				-0.2
4,000,219	+				-0.2
4,000,224	-				-0.2
4,000,275	+				-1.6
4,000,313	-				-0.3
4,000,608	-		ABI39_RS15475	0.26	-2.8
4,000,638	+		ABI39_RS15475	0.28	-1.2
4,000,871	-		ABI39_RS15475	0.44	-1.6
4,000,875	+		ABI39_RS15475	0.45	-0.6
4,000,876	-		ABI39_RS15475	0.45	-0.8
4,000,919	+		ABI39_RS15475	0.48	-2.0
4,000,920	-		ABI39_RS15475	0.48	-2.6
4,001,055	-		ABI39_RS15475	0.57	-1.4
4,001,055	-		ABI39_RS15475	0.57	-2.0
4,001,055	-		ABI39_RS15475	0.57	-2.3
4,001,055	-		ABI39_RS15475	0.57	-3.3
4,001,055	-		ABI39_RS15475	0.57	-1.9
4,001,259	+		ABI39_RS15475	0.72	-1.9
4,001,260	-		ABI39_RS15475	0.72	-0.4
4,001,260	-		ABI39_RS15475	0.72	-2.4
4,001,367	+		ABI39_RS15475	0.80	-2.0
4,001,370	-		ABI39_RS15475	0.80	-2.7
4,001,472	+		ABI39_RS15475	0.87	-2.0
4,001,653	-				-2.6
4,001,665	+				-0.6
4,001,665	+				-1.2
4,001,667	+				-0.4
4,001,943	-				-2.0
4,001,954	+				+0.7
4,001,963	-				-0.4
4,002,136	+		ABI39_RS15480	0.11	-2.6
4,002,331	+		ABI39_RS15480	0.25	-1.7
4,002,437	-		ABI39_RS15480	0.32	-1.2