Experiment: polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS15400 and ABI39_RS15405 are separated by 102 nucleotides ABI39_RS15405 and ABI39_RS15410 are separated by 3 nucleotides ABI39_RS15410 and ABI39_RS15415 are separated by 15 nucleotides ABI39_RS15415 and ABI39_RS15420 are separated by 71 nucleotides
ABI39_RS15400: ABI39_RS15400 - TraR/DksA C4-type zinc finger protein, at 3,989,097 to 3,989,477
_RS15400
ABI39_RS15405: ABI39_RS15405 - lipoprotein signal peptidase, at 3,989,580 to 3,990,218
_RS15405
ABI39_RS15410: ABI39_RS15410 - DUF4296 domain-containing protein, at 3,990,222 to 3,991,196
_RS15410
ABI39_RS15415: ABI39_RS15415 - hypothetical protein, at 3,991,212 to 3,991,535
_RS15415
ABI39_RS15420: ABI39_RS15420 - RNA methyltransferase, at 3,991,607 to 3,992,362
_RS15420
Position (kb) 3990
3991
3992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3989.250 kb on + strand, within ABI39_RS15400 at 3989.353 kb on + strand, within ABI39_RS15400 at 3989.353 kb on + strand, within ABI39_RS15400 at 3989.353 kb on + strand, within ABI39_RS15400 at 3989.428 kb on + strand, within ABI39_RS15400 at 3989.480 kb on + strand at 3989.501 kb on + strand at 3989.534 kb on + strand at 3990.602 kb on + strand, within ABI39_RS15410 at 3990.603 kb on - strand, within ABI39_RS15410 at 3990.614 kb on - strand, within ABI39_RS15410 at 3990.614 kb on - strand, within ABI39_RS15410 at 3990.734 kb on + strand, within ABI39_RS15410 at 3990.735 kb on - strand, within ABI39_RS15410 at 3990.737 kb on - strand, within ABI39_RS15410 at 3990.737 kb on - strand, within ABI39_RS15410 at 3990.849 kb on + strand, within ABI39_RS15410 at 3990.852 kb on - strand, within ABI39_RS15410 at 3990.852 kb on - strand, within ABI39_RS15410 at 3990.853 kb on + strand, within ABI39_RS15410 at 3990.854 kb on - strand, within ABI39_RS15410 at 3990.900 kb on + strand, within ABI39_RS15410 at 3990.929 kb on + strand, within ABI39_RS15410 at 3991.212 kb on - strand at 3991.295 kb on + strand, within ABI39_RS15415 at 3991.362 kb on - strand, within ABI39_RS15415 at 3991.365 kb on - strand, within ABI39_RS15415 at 3991.377 kb on - strand, within ABI39_RS15415 at 3991.461 kb on + strand, within ABI39_RS15415 at 3991.472 kb on + strand, within ABI39_RS15415 at 3991.473 kb on - strand, within ABI39_RS15415 at 3991.475 kb on - strand, within ABI39_RS15415 at 3991.505 kb on + strand at 3991.532 kb on - strand at 3991.534 kb on - strand at 3991.616 kb on + strand at 3991.710 kb on + strand, within ABI39_RS15420 at 3991.710 kb on + strand, within ABI39_RS15420 at 3991.713 kb on - strand, within ABI39_RS15420 at 3991.811 kb on - strand, within ABI39_RS15420 at 3991.942 kb on - strand, within ABI39_RS15420 at 3992.089 kb on - strand, within ABI39_RS15420
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) remove 3,989,250 + ABI39_RS15400 0.40 -0.5 3,989,353 + ABI39_RS15400 0.67 +0.3 3,989,353 + ABI39_RS15400 0.67 -0.7 3,989,353 + ABI39_RS15400 0.67 -0.3 3,989,428 + ABI39_RS15400 0.87 -1.0 3,989,480 + +0.7 3,989,501 + +0.5 3,989,534 + +1.8 3,990,602 + ABI39_RS15410 0.39 -2.6 3,990,603 - ABI39_RS15410 0.39 +0.4 3,990,614 - ABI39_RS15410 0.40 -1.6 3,990,614 - ABI39_RS15410 0.40 -0.2 3,990,734 + ABI39_RS15410 0.53 -3.4 3,990,735 - ABI39_RS15410 0.53 -0.6 3,990,737 - ABI39_RS15410 0.53 -1.9 3,990,737 - ABI39_RS15410 0.53 -2.8 3,990,849 + ABI39_RS15410 0.64 -2.3 3,990,852 - ABI39_RS15410 0.65 -1.6 3,990,852 - ABI39_RS15410 0.65 -0.9 3,990,853 + ABI39_RS15410 0.65 -2.2 3,990,854 - ABI39_RS15410 0.65 -1.6 3,990,900 + ABI39_RS15410 0.70 -2.3 3,990,929 + ABI39_RS15410 0.73 -0.3 3,991,212 - -0.9 3,991,295 + ABI39_RS15415 0.26 -2.3 3,991,362 - ABI39_RS15415 0.46 +0.4 3,991,365 - ABI39_RS15415 0.47 -1.4 3,991,377 - ABI39_RS15415 0.51 -1.4 3,991,461 + ABI39_RS15415 0.77 -0.3 3,991,472 + ABI39_RS15415 0.80 +1.4 3,991,473 - ABI39_RS15415 0.81 -0.3 3,991,475 - ABI39_RS15415 0.81 -2.3 3,991,505 + -0.9 3,991,532 - -0.9 3,991,534 - +1.4 3,991,616 + +2.4 3,991,710 + ABI39_RS15420 0.14 -0.3 3,991,710 + ABI39_RS15420 0.14 -1.4 3,991,713 - ABI39_RS15420 0.14 +0.3 3,991,811 - ABI39_RS15420 0.27 +0.8 3,991,942 - ABI39_RS15420 0.44 -0.3 3,992,089 - ABI39_RS15420 0.64 +0.7
Or see this region's nucleotide sequence